SMTL ID : 4d76.1

Human FXIa in complex with small molecule inhibitors.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.77 Å

Oligo State

monomer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 3 residues within 4Å: Chain A: T.20, R.26 Ligands: J1J.4 No protein-ligand interaction detected (PLIP) GOL.2: 5 residues within 4Å: Chain A: H.44, A.88, S.207, W.208 Ligands: J1J.4 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.207 GOL.3: 5 residues within 4Å: Chain A: F.74, T.102, V.103, N.104, Q.109 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:T.102, A:N.104, A:N.104, A:Q.109, A:Q.109 Water bridges: A:S.72, A:S.72

1 x J1J: N-[(2S)-1-({5-[(diaminomethylidene)amino]pentyl}amino)-1-oxo-3-phenylpropan-2-yl]-4-hydroxy-2-oxo-1,2-dihydroquinoline-6-carboxamide

J1J.4: 24 residues within 4Å: Chain A: R.26, H.27, L.28, C.29, H.44, C.45, Y.134, I.141, D.182, A.183, C.184, K.185, G.186, D.187, S.188, T.206, S.207, W.208, G.209, G.211, C.212, G.219 Ligands: GOL.1, GOL.2 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:L.28, A:I.141, A:T.206 Hydrogen bonds: A:H.27, A:Y.134, A:G.186, A:D.187, A:S.188, A:G.211 Water bridges: A:L.28, A:S.188, A:G.209, A:G.209, A:V.220, A:Y.221 Salt bridges: A:D.182

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 2 residues within 4Å: Chain A: K.117, R.120 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:K.117, A:R.120 SO4.6: 2 residues within 4Å: Chain A: K.195, W.200 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.195 SO4.7: 2 residues within 4Å: Chain A: Q.37, Q.77 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.37, A:Q.77 Salt bridges: A:K.98

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jacso, T. et al., From Mm Fragments to Nm Compounds Using Iloe-NMR to Guide Linking of Compounds in Fragment Based Drug Discovery (Fbdd). To be Published

Release Date

2016-01-20

Peptides

COAGULATION FACTOR XI: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

COAGULATION FACTOR XI

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