SMTL ID : 4d7f.1

Human FXIa in complex with small molecule inhibitors.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.62 Å

Oligo State

monomer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: H.44, S.207, W.208 Ligands: IXA.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.207

1 x IXA: N-[(2S)-1-({4-[(DIAMINOMETHYLIDENE)AMINO]BUTYL}AMINO)-1-OXO-3-PHENYLPROPAN-2-YL]-4-HYDROXY-2-OXO-1,2-DIHYDROQUINOLINE-6-CARBOXAMIDE

IXA.2: 23 residues within 4Å: Chain A: R.26, H.27, L.28, C.29, H.44, C.45, Y.134, I.141, D.182, A.183, C.184, K.185, G.186, D.187, S.188, T.206, S.207, W.208, G.209, G.211, C.212, G.219 Ligands: GOL.1 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:L.28, A:I.141, A:T.206 Hydrogen bonds: A:H.27, A:Y.134, A:G.186, A:D.187, A:S.188, A:G.211 Water bridges: A:S.188, A:W.208, A:W.208, A:G.209, A:G.209 Salt bridges: A:D.182

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 2 residues within 4Å: Chain A: T.5, A.6 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.6 Water bridges: A:T.5 SO4.4: 2 residues within 4Å: Chain A: K.117, R.120 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:K.117, A:R.120 SO4.5: 1 residues within 4Å: Chain A: S.72 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.72, A:S.72 Water bridges: A:S.72 SO4.6: 2 residues within 4Å: Chain A: K.195, W.200 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.195

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jacso, T. et al., From Mm Fragments to Nm Compounds Using Iloe-NMR to Guide Linking of Compounds in Fragment Based Drug Discovery (Fbdd). To be Published

Release Date

2016-01-20

Peptides

COAGULATION FACTOR XI: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

COAGULATION FACTOR XI

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