- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.61 Å
- Oligo State
- homo-hexamer
- Ligands
- 12 x SO4: SULFATE ION(Non-functional Binders)
- 13 x GOL: GLYCEROL(Non-functional Binders)
GOL.3: 7 residues within 4Å:- Chain A: Y.180, N.181, D.182
- Chain D: N.94, L.207, K.210, H.211
4 PLIP interactions:3 interactions with chain D, 1 interactions with chain A- Hydrogen bonds: D:N.94, D:H.211, A:D.182
- Water bridges: D:Q.98
GOL.4: 7 residues within 4Å:- Chain A: N.94, L.207, K.210, H.211
- Chain D: Y.180, N.181, D.182
5 PLIP interactions:3 interactions with chain A, 2 interactions with chain D- Hydrogen bonds: A:N.94, A:K.210, D:D.182, D:D.182
- Water bridges: A:Q.98
GOL.7: 6 residues within 4Å:- Chain A: S.172, G.193
- Chain B: C.148, A.149, D.150, A.209
6 PLIP interactions:4 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:A.149, B:D.150, A:G.193
- Water bridges: B:C.148, B:A.209, A:S.172
GOL.10: 6 residues within 4Å:- Chain C: C.148, A.149, D.150, A.209
- Chain E: S.172, G.193
5 PLIP interactions:3 interactions with chain C, 2 interactions with chain E- Hydrogen bonds: C:A.149, C:D.150, E:G.193
- Water bridges: C:A.209, E:S.172
GOL.11: 7 residues within 4Å:- Chain B: Y.180, N.181, D.182
- Chain C: N.94, L.207, K.210, H.211
4 PLIP interactions:2 interactions with chain C, 2 interactions with chain B- Hydrogen bonds: C:N.94, B:D.182, B:D.182
- Water bridges: C:Q.98
GOL.12: 5 residues within 4Å:- Chain C: T.231, T.232, A.233, E.234, R.236
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:A.233, C:E.234, C:R.236, C:R.236
GOL.13: 7 residues within 4Å:- Chain B: N.94, L.207, K.210, H.211
- Chain C: Y.180, N.181, D.182
4 PLIP interactions:1 interactions with chain C, 3 interactions with chain B- Hydrogen bonds: C:D.182, B:N.94, B:H.211
- Water bridges: B:Q.98
GOL.16: 6 residues within 4Å:- Chain D: C.148, A.149, D.150, A.209
- Chain F: S.172, G.193
5 PLIP interactions:3 interactions with chain D, 2 interactions with chain F- Hydrogen bonds: D:A.149, F:G.193
- Water bridges: D:C.148, D:A.209, F:S.172
GOL.19: 6 residues within 4Å:- Chain C: S.172, G.193
- Chain E: C.148, A.149, D.150, A.209
5 PLIP interactions:3 interactions with chain E, 2 interactions with chain C- Hydrogen bonds: E:A.149, C:G.193
- Water bridges: E:D.150, E:A.209, C:S.172
GOL.20: 7 residues within 4Å:- Chain E: Y.180, N.181, D.182
- Chain F: N.94, L.207, K.210, H.211
4 PLIP interactions:2 interactions with chain F, 2 interactions with chain E- Hydrogen bonds: F:N.94, E:D.182, E:D.182
- Water bridges: F:Q.98
GOL.23: 6 residues within 4Å:- Chain D: S.172, G.193
- Chain F: C.148, A.149, D.150, A.209
5 PLIP interactions:2 interactions with chain D, 3 interactions with chain F- Hydrogen bonds: D:G.193, F:A.149
- Water bridges: D:S.172, F:D.150, F:A.209
GOL.24: 7 residues within 4Å:- Chain E: N.94, L.207, K.210, H.211
- Chain F: Y.180, N.181, D.182
4 PLIP interactions:3 interactions with chain E, 1 interactions with chain F- Hydrogen bonds: E:N.94, E:H.211, F:D.182
- Water bridges: E:Q.98
GOL.25: 5 residues within 4Å:- Chain F: S.184, Q.185, I.186, E.187, L.226
3 PLIP interactions:3 interactions with chain F- Hydrogen bonds: F:S.184, F:I.186, F:E.187
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- de Giuseppe, P.O. et al., Insights into phosphate cooperativity and influence of substrate modifications on binding and catalysis of hexameric purine nucleoside phosphorylases. Plos One (2012)
- Release Date
- 2012-09-26
- Peptides
- Purine nucleoside phosphorylase deoD-type: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.61 Å
- Oligo State
- homo-hexamer
- Ligands
- 12 x SO4: SULFATE ION(Non-functional Binders)
- 13 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- de Giuseppe, P.O. et al., Insights into phosphate cooperativity and influence of substrate modifications on binding and catalysis of hexameric purine nucleoside phosphorylases. Plos One (2012)
- Release Date
- 2012-09-26
- Peptides
- Purine nucleoside phosphorylase deoD-type: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F