- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.35 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x 6CR: 6-chloro-9-(beta-D-ribofuranosyl)-9H-purin-2-amine(Non-covalent)
- 6 x CL: CHLORIDE ION(Non-functional Binders)
CL.2: 4 residues within 4Å:- Chain A: R.107, G.109, S.110
- Ligands: 6CR.1
Ligand excluded by PLIPCL.7: 4 residues within 4Å:- Chain B: R.107, G.109, S.110
- Ligands: 6CR.6
Ligand excluded by PLIPCL.12: 4 residues within 4Å:- Chain C: R.107, G.109, S.110
- Ligands: 6CR.11
Ligand excluded by PLIPCL.17: 4 residues within 4Å:- Chain D: R.107, G.109, S.110
- Ligands: 6CR.16
Ligand excluded by PLIPCL.22: 4 residues within 4Å:- Chain E: R.107, G.109, S.110
- Ligands: 6CR.21
Ligand excluded by PLIPCL.27: 4 residues within 4Å:- Chain F: R.107, G.109, S.110
- Ligands: 6CR.26
Ligand excluded by PLIP- 6 x ACT: ACETATE ION(Non-functional Binders)
ACT.3: 4 residues within 4Å:- Chain A: K.46, C.58, E.61, Y.66
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:E.61
- Salt bridges: A:K.46
ACT.8: 4 residues within 4Å:- Chain B: K.46, C.58, E.61, Y.66
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:E.61
- Salt bridges: B:K.46
ACT.13: 4 residues within 4Å:- Chain C: K.46, C.58, E.61, Y.66
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:E.61
- Salt bridges: C:K.46
ACT.18: 4 residues within 4Å:- Chain D: K.46, C.58, E.61, Y.66
1 PLIP interactions:1 interactions with chain D- Salt bridges: D:K.46
ACT.23: 4 residues within 4Å:- Chain E: K.46, C.58, E.61, Y.66
1 PLIP interactions:1 interactions with chain E- Salt bridges: E:K.46
ACT.28: 4 residues within 4Å:- Chain F: K.46, C.58, E.61, Y.66
1 PLIP interactions:1 interactions with chain F- Salt bridges: F:K.46
- 12 x GOL: GLYCEROL(Non-functional Binders)
GOL.4: 6 residues within 4Å:- Chain A: S.22, V.23, E.95, Q.98, S.99
- Chain D: Y.180
5 PLIP interactions:4 interactions with chain A, 1 interactions with chain D- Hydrogen bonds: A:V.23, A:Q.98, A:S.99, A:S.99, D:Y.180
GOL.5: 8 residues within 4Å:- Chain A: F.145, C.148, A.149, D.150, A.209
- Chain E: S.172, Y.192, G.193
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:A.149
- Water bridges: A:C.148, A:F.151
GOL.9: 6 residues within 4Å:- Chain B: S.22, V.23, E.95, Q.98, S.99
- Chain F: Y.180
5 PLIP interactions:4 interactions with chain B, 1 interactions with chain F- Hydrogen bonds: B:V.23, B:Q.98, B:S.99, B:S.99, F:Y.180
GOL.10: 8 residues within 4Å:- Chain B: F.145, C.148, A.149, D.150, A.209
- Chain D: S.172, Y.192, G.193
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:A.149
- Water bridges: B:C.148, B:F.151
GOL.14: 6 residues within 4Å:- Chain C: S.22, V.23, E.95, Q.98, S.99
- Chain E: Y.180
5 PLIP interactions:4 interactions with chain C, 1 interactions with chain E- Hydrogen bonds: C:V.23, C:Q.98, C:S.99, C:S.99, E:Y.180
GOL.15: 8 residues within 4Å:- Chain C: F.145, C.148, A.149, D.150, A.209
- Chain F: S.172, Y.192, G.193
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:A.149
- Water bridges: C:C.148, C:F.151
GOL.19: 6 residues within 4Å:- Chain A: Y.180
- Chain D: S.22, V.23, E.95, Q.98, S.99
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:V.23, D:Q.98, D:S.99, D:S.99
GOL.20: 8 residues within 4Å:- Chain B: S.172, Y.192, G.193
- Chain D: F.145, C.148, A.149, D.150, A.209
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:A.149
- Water bridges: D:C.148, D:F.151
GOL.24: 6 residues within 4Å:- Chain C: Y.180
- Chain E: S.22, V.23, E.95, Q.98, S.99
4 PLIP interactions:4 interactions with chain E- Hydrogen bonds: E:V.23, E:Q.98, E:S.99, E:S.99
GOL.25: 8 residues within 4Å:- Chain A: S.172, Y.192, G.193
- Chain E: F.145, C.148, A.149, D.150, A.209
3 PLIP interactions:3 interactions with chain E- Hydrogen bonds: E:A.149
- Water bridges: E:C.148, E:F.151
GOL.29: 6 residues within 4Å:- Chain B: Y.180
- Chain F: S.22, V.23, E.95, Q.98, S.99
4 PLIP interactions:4 interactions with chain F- Hydrogen bonds: F:V.23, F:Q.98, F:S.99, F:S.99
GOL.30: 8 residues within 4Å:- Chain C: S.172, Y.192, G.193
- Chain F: F.145, C.148, A.149, D.150, A.209
3 PLIP interactions:3 interactions with chain F- Hydrogen bonds: F:A.149
- Water bridges: F:C.148, F:F.151
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- de Giuseppe, P.O. et al., Insights into phosphate cooperativity and influence of substrate modifications on binding and catalysis of hexameric purine nucleoside phosphorylases. Plos One (2012)
- Release Date
- 2012-09-26
- Peptides
- Purine nucleoside phosphorylase deoD-type: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.35 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x 6CR: 6-chloro-9-(beta-D-ribofuranosyl)-9H-purin-2-amine(Non-covalent)
- 6 x CL: CHLORIDE ION(Non-functional Binders)
- 6 x ACT: ACETATE ION(Non-functional Binders)
- 12 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- de Giuseppe, P.O. et al., Insights into phosphate cooperativity and influence of substrate modifications on binding and catalysis of hexameric purine nucleoside phosphorylases. Plos One (2012)
- Release Date
- 2012-09-26
- Peptides
- Purine nucleoside phosphorylase deoD-type: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
A