- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- monomer
- Ligands
- 2 x SO4: SULFATE ION(Non-functional Binders)
- 17 x ACT: ACETATE ION(Non-functional Binders)
ACT.3: 1 residues within 4Å:- Chain A: E.187
Ligand excluded by PLIPACT.4: 2 residues within 4Å:- Chain A: S.53, W.54
Ligand excluded by PLIPACT.5: 3 residues within 4Å:- Chain A: P.327, A.328
- Ligands: ACT.15
Ligand excluded by PLIPACT.6: 3 residues within 4Å:- Chain A: Q.361, S.372, L.373
Ligand excluded by PLIPACT.7: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPACT.8: 3 residues within 4Å:- Chain A: P.312, Q.313, K.316
Ligand excluded by PLIPACT.9: 2 residues within 4Å:- Chain A: D.427, R.457
Ligand excluded by PLIPACT.10: 4 residues within 4Å:- Chain A: F.147, K.148, N.149, K.157
Ligand excluded by PLIPACT.11: 4 residues within 4Å:- Chain A: E.434, A.449, L.450, D.453
Ligand excluded by PLIPACT.12: 2 residues within 4Å:- Chain A: Q.168, K.193
Ligand excluded by PLIPACT.13: 2 residues within 4Å:- Chain A: R.68
- Ligands: ACT.17
Ligand excluded by PLIPACT.14: 4 residues within 4Å:- Chain A: S.243, Q.244, I.246, Y.485
Ligand excluded by PLIPACT.15: 2 residues within 4Å:- Chain A: A.328
- Ligands: ACT.5
Ligand excluded by PLIPACT.16: 1 residues within 4Å:- Chain A: R.386
Ligand excluded by PLIPACT.17: 5 residues within 4Å:- Chain A: K.52, R.68, D.69, D.70
- Ligands: ACT.13
Ligand excluded by PLIPACT.18: 3 residues within 4Å:- Chain A: N.235, A.237, Y.238
Ligand excluded by PLIPACT.19: 2 residues within 4Å:- Chain A: Q.106, K.123
Ligand excluded by PLIP- 10 x GOL: GLYCEROL(Non-functional Binders)
GOL.20: 6 residues within 4Å:- Chain A: P.11, G.219, N.220, G.222, L.223
- Ligands: GOL.23
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:N.220, A:G.222, A:G.222
- Water bridges: A:Y.218, A:N.220, A:N.220
GOL.21: 8 residues within 4Å:- Chain A: R.89, L.92, R.95, I.107, V.108, D.109, V.110
- Ligands: GOL.26
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:R.95, A:D.109, A:V.110
- Water bridges: A:R.89
GOL.22: 4 residues within 4Å:- Chain A: K.330, D.331, I.332, R.365
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:D.331, A:D.331, A:I.332, A:R.365
GOL.23: 6 residues within 4Å:- Chain A: N.220, E.247, R.396, M.472, A.489
- Ligands: GOL.20
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:N.220, A:N.220, A:E.247, A:R.396
GOL.24: 2 residues within 4Å:- Chain A: K.316, Q.366
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:Q.366
- Water bridges: A:K.316
GOL.25: 7 residues within 4Å:- Chain A: V.273, N.274, K.275, K.276, S.308, Q.309, Y.310
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:K.275, A:K.275, A:K.276, A:Y.310
- Water bridges: A:V.273, A:S.308
GOL.26: 2 residues within 4Å:- Chain A: R.89
- Ligands: GOL.21
1 PLIP interactions:1 interactions with chain A- Water bridges: A:R.89
GOL.27: 6 residues within 4Å:- Chain A: S.31, M.32, R.140, E.491, I.492, E.495
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:R.140, A:E.495
- Water bridges: A:F.28, A:K.39, A:R.140, A:E.491, A:I.492
GOL.28: 4 residues within 4Å:- Chain A: Y.382, Q.385, H.416
- Ligands: L2D.30
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:Y.382
- Water bridges: A:Q.385, A:Q.385
GOL.29: 5 residues within 4Å:- Chain A: G.44, Y.127, Q.131, P.299, Y.300
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:G.44, A:Q.131, A:Y.300, A:Y.300
- Water bridges: A:Y.127, A:R.447
- 1 x L2D: {2,2'-[(1R,2R)-cyclohexane-1,2-diylbis{[(pyridin-2-yl-kappaN)methyl]imino-kappaN}]diacetato-kappaO(2-)}iron(Non-covalent)
L2D.30: 10 residues within 4Å:- Chain A: Y.22, M.27, W.100, R.137, W.398, Y.402, S.415, H.416, T.490
- Ligands: GOL.28
13 PLIP interactions:13 interactions with chain A,- Hydrophobic interactions: A:W.100, A:W.398, A:W.398, A:W.398, A:Y.402, A:T.490
- Salt bridges: A:R.137, A:H.416
- pi-Stacking: A:W.100, A:W.100
- pi-Cation interactions: A:W.100, A:W.398, A:W.398
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Cherrier, M.V. et al., The structure of the periplasmic nickel-binding protein NikA provides insights for artificial metalloenzyme design. J.Biol.Inorg.Chem. (2012)
- Release Date
- 2012-05-09
- Peptides
- Nickel-binding periplasmic protein: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- monomer
- Ligands
- 2 x SO4: SULFATE ION(Non-functional Binders)
- 17 x ACT: ACETATE ION(Non-functional Binders)
- 10 x GOL: GLYCEROL(Non-functional Binders)
- 1 x L2D: {2,2'-[(1R,2R)-cyclohexane-1,2-diylbis{[(pyridin-2-yl-kappaN)methyl]imino-kappaN}]diacetato-kappaO(2-)}iron(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Cherrier, M.V. et al., The structure of the periplasmic nickel-binding protein NikA provides insights for artificial metalloenzyme design. J.Biol.Inorg.Chem. (2012)
- Release Date
- 2012-05-09
- Peptides
- Nickel-binding periplasmic protein: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A