- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- monomer
- Ligands
- 15 x ACT: ACETATE ION(Non-functional Binders)
- 13 x GOL: GLYCEROL(Non-functional Binders)
GOL.16: 3 residues within 4Å:- Chain A: K.148, N.149, K.157
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:N.149, A:K.157
- Water bridges: A:F.147, A:K.157
GOL.17: 1 residues within 4Å:- Chain A: N.281
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:N.281, A:N.281
GOL.18: 6 residues within 4Å:- Chain A: S.31, M.32, K.39, E.491, I.492, E.495
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:K.39, A:K.39
- Water bridges: A:F.28, A:R.140, A:R.140, A:I.492, A:E.495
GOL.19: 7 residues within 4Å:- Chain A: N.220, E.221, G.222, D.350, L.352, S.353
- Ligands: GOL.20
8 PLIP interactions:8 interactions with chain A- Hydrogen bonds: A:N.220, A:N.220, A:E.221, A:G.222, A:S.353, A:R.396
- Water bridges: A:G.222, A:L.352
GOL.20: 9 residues within 4Å:- Chain A: W.10, P.11, R.205, G.219, N.220, G.222, L.223
- Ligands: GOL.19, GOL.26
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:N.220, A:G.222, A:G.222
- Water bridges: A:R.205, A:N.220
GOL.21: 2 residues within 4Å:- Chain A: D.427, R.457
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.457, A:R.457
GOL.22: 2 residues within 4Å:- Chain A: N.75, G.76
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:N.75
GOL.23: 4 residues within 4Å:- Chain A: A.230, R.231, Q.234, Y.284
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:R.231, A:R.231, A:Q.234
- Water bridges: A:R.231, A:R.231
GOL.24: 3 residues within 4Å:- Chain A: K.354, E.358
- Ligands: GOL.27
1 PLIP interactions:1 interactions with chain A- Water bridges: A:E.358
GOL.25: 3 residues within 4Å:- Chain A: Y.22, T.23, R.97
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:T.23, A:T.23, A:R.97, A:R.97
GOL.26: 6 residues within 4Å:- Chain A: W.10, N.220, M.472, A.489, T.490
- Ligands: GOL.20
3 PLIP interactions:3 interactions with chain A- Water bridges: A:N.220, A:N.220, A:N.220
GOL.27: 2 residues within 4Å:- Chain A: K.354
- Ligands: GOL.24
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:K.354, A:K.354
GOL.28: 2 residues within 4Å:- Chain A: R.68
- Ligands: ACT.1
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.68, A:R.68
- 1 x L2M: {(R)-N-[(1S,2S)-2-{methyl[(pyridin-2-yl-kappaN)methyl]amino-kappaN}cyclohexyl]-N-[(pyridin-2-yl-kappaN)methyl]glycinato-kappa~2~N,O}iron(2+)(Non-covalent)
L2M.29: 12 residues within 4Å:- Chain A: Y.22, T.23, M.27, W.100, R.137, W.398, Y.402, H.416, T.490
- Ligands: ACT.7, UNX.30, UNX.31
14 PLIP interactions:14 interactions with chain A,- Hydrophobic interactions: A:W.100, A:W.100, A:W.398, A:W.398, A:W.398, A:Y.402, A:Y.402, A:T.490
- Salt bridges: A:R.137
- pi-Cation interactions: A:W.100, A:R.137, A:W.398, A:W.398, A:W.398
- 2 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)
- 1 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Cherrier, M.V. et al., The structure of the periplasmic nickel-binding protein NikA provides insights for artificial metalloenzyme design. J.Biol.Inorg.Chem. (2012)
- Release Date
- 2012-05-09
- Peptides
- Nickel-binding periplasmic protein: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- monomer
- Ligands
- 15 x ACT: ACETATE ION(Non-functional Binders)
- 13 x GOL: GLYCEROL(Non-functional Binders)
- 1 x L2M: {(R)-N-[(1S,2S)-2-{methyl[(pyridin-2-yl-kappaN)methyl]amino-kappaN}cyclohexyl]-N-[(pyridin-2-yl-kappaN)methyl]glycinato-kappa~2~N,O}iron(2+)(Non-covalent)
- 2 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)
- 1 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Cherrier, M.V. et al., The structure of the periplasmic nickel-binding protein NikA provides insights for artificial metalloenzyme design. J.Biol.Inorg.Chem. (2012)
- Release Date
- 2012-05-09
- Peptides
- Nickel-binding periplasmic protein: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A