SMTL ID : 4dg9.1

Structure of holo-PA1221, an NRPS protein containing adenylation and PCP domains bound to vinylsulfonamide inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.55 Å

Oligo State

monomer

Ligands

1 x DG9: 5'-({[(2R,3R)-3-amino-2-{[2-({N-[(2R)-2-hydroxy-3,3-dimethyl-4-{[oxido(oxo)phosphonio]oxy}butanoyl]-beta-alanyl}amino)ethyl]sulfanyl}-4-methylpentyl]sulfonyl}amino)-5'-deoxyadenosine(Covalent)

DG9.1: 29 residues within 4Å: Chain A: P.212, F.215, D.216, A.217, W.258, T.260, L.263, G.284, G.285, D.286, I.287, N.307, G.308, Y.309, G.310, P.311, T.312, T.316, F.317, I.335, D.402, F.414, K.423, N.425, G.426, Y.427, R.428, S.555, L.556 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:A.217, A:W.258, A:W.258, A:L.263, A:F.317 Hydrogen bonds: A:D.216, A:G.285, A:N.307, A:G.308, A:T.312, A:D.402, A:R.417, A:K.423, A:K.423, A:N.425, A:N.425, A:G.426 Water bridges: A:F.215, A:D.286 pi-Stacking: A:Y.309

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mitchell, C.A. et al., Structure of PA1221, a Nonribosomal Peptide Synthetase Containing Adenylation and Peptidyl Carrier Protein Domains. Biochemistry (2012)

Release Date

2012-05-02

Peptides

PA1221: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

PA1221

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