SMTL ID : 4dgh.3 (2 other biounits)

Structure of SulP Transporter STAS Domain from Vibrio Cholerae Refined to 1.9 Angstrom Resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-octamer

Ligands

4 x K: POTASSIUM ION(Non-covalent)

K.1: 6 residues within 4Å: Chain A: L.26, R.55, L.56, K.57, W.58, V.59 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:L.26, A:R.55 K.20: 6 residues within 4Å: Chain C: L.26, R.55, L.56, K.57, W.58, V.59 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:L.26, C:R.55 K.39: 6 residues within 4Å: Chain E: L.26, R.55, L.56, K.57, W.58, V.59 2 PLIP interactions: 2 interactions with chain E Metal complexes: E:L.26, E:R.55 K.58: 6 residues within 4Å: Chain G: L.26, R.55, L.56, K.57, W.58, V.59 2 PLIP interactions: 2 interactions with chain G Metal complexes: G:L.26, G:R.55

60 x IOD: IODIDE ION(Non-functional Binders)

IOD.2: 3 residues within 4Å: Chain A: K.96 Chain G: R.19 Ligands: IOD.3 Ligand excluded by PLIP IOD.3: 3 residues within 4Å: Chain A: A.100 Chain G: R.19 Ligands: IOD.2 Ligand excluded by PLIP IOD.4: 5 residues within 4Å: Chain A: R.55, K.57, S.87, G.88, F.115 Ligand excluded by PLIP IOD.5: 5 residues within 4Å: Chain A: L.17 Chain E: F.61, M.62, R.92, K.96 Ligand excluded by PLIP IOD.6: 3 residues within 4Å: Chain A: P.113, V.114, G.117 Ligand excluded by PLIP IOD.7: 2 residues within 4Å: Chain A: R.55 Chain E: F.30 Ligand excluded by PLIP IOD.10: 5 residues within 4Å: Chain B: M.62, R.92, K.96 Chain F: T.16, L.17 Ligand excluded by PLIP IOD.11: 3 residues within 4Å: Chain B: R.55 Chain H: F.30, F.61 Ligand excluded by PLIP IOD.12: 2 residues within 4Å: Chain B: P.113, G.117 Ligand excluded by PLIP IOD.13: 1 residues within 4Å: Ligands: IOD.73 Ligand excluded by PLIP IOD.14: 5 residues within 4Å: Chain B: R.55, K.57, S.87, G.88, F.115 Ligand excluded by PLIP IOD.15: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IOD.16: 2 residues within 4Å: Chain B: K.96 Ligands: IOD.51 Ligand excluded by PLIP IOD.17: 2 residues within 4Å: Chain B: Q.95, K.99 Ligand excluded by PLIP IOD.18: 1 residues within 4Å: Chain H: K.99 Ligand excluded by PLIP IOD.21: 3 residues within 4Å: Chain C: K.96 Chain E: R.19 Ligands: IOD.22 Ligand excluded by PLIP IOD.22: 3 residues within 4Å: Chain C: A.100 Chain E: R.19 Ligands: IOD.21 Ligand excluded by PLIP IOD.23: 5 residues within 4Å: Chain C: R.55, K.57, S.87, G.88, F.115 Ligand excluded by PLIP IOD.24: 5 residues within 4Å: Chain C: L.17 Chain G: F.61, M.62, R.92, K.96 Ligand excluded by PLIP IOD.25: 3 residues within 4Å: Chain C: P.113, V.114, G.117 Ligand excluded by PLIP IOD.26: 2 residues within 4Å: Chain C: R.55 Chain G: F.30 Ligand excluded by PLIP IOD.29: 5 residues within 4Å: Chain D: M.62, R.92, K.96 Chain H: T.16, L.17 Ligand excluded by PLIP IOD.30: 3 residues within 4Å: Chain D: R.55 Chain F: F.30, F.61 Ligand excluded by PLIP IOD.31: 2 residues within 4Å: Chain D: P.113, G.117 Ligand excluded by PLIP IOD.32: 1 residues within 4Å: Ligands: IOD.54 Ligand excluded by PLIP IOD.33: 5 residues within 4Å: Chain D: R.55, K.57, S.87, G.88, F.115 Ligand excluded by PLIP IOD.34: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IOD.35: 2 residues within 4Å: Chain D: K.96 Ligands: IOD.70 Ligand excluded by PLIP IOD.36: 2 residues within 4Å: Chain D: Q.95, K.99 Ligand excluded by PLIP IOD.37: 1 residues within 4Å: Chain F: K.99 Ligand excluded by PLIP IOD.40: 3 residues within 4Å: Chain A: R.19 Chain E: K.96 Ligands: IOD.41 Ligand excluded by PLIP IOD.41: 3 residues within 4Å: Chain A: R.19 Chain E: A.100 Ligands: IOD.40 Ligand excluded by PLIP IOD.42: 5 residues within 4Å: Chain E: R.55, K.57, S.87, G.88, F.115 Ligand excluded by PLIP IOD.43: 5 residues within 4Å: Chain C: F.61, M.62, R.92, K.96 Chain E: L.17 Ligand excluded by PLIP IOD.44: 3 residues within 4Å: Chain E: P.113, V.114, G.117 Ligand excluded by PLIP IOD.45: 2 residues within 4Å: Chain C: F.30 Chain E: R.55 Ligand excluded by PLIP IOD.48: 5 residues within 4Å: Chain D: T.16, L.17 Chain F: M.62, R.92, K.96 Ligand excluded by PLIP IOD.49: 3 residues within 4Å: Chain B: F.30, F.61 Chain F: R.55 Ligand excluded by PLIP IOD.50: 2 residues within 4Å: Chain F: P.113, G.117 Ligand excluded by PLIP IOD.51: 1 residues within 4Å: Ligands: IOD.16 Ligand excluded by PLIP IOD.52: 5 residues within 4Å: Chain F: R.55, K.57, S.87, G.88, F.115 Ligand excluded by PLIP IOD.53: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IOD.54: 2 residues within 4Å: Chain F: K.96 Ligands: IOD.32 Ligand excluded by PLIP IOD.55: 2 residues within 4Å: Chain F: Q.95, K.99 Ligand excluded by PLIP IOD.56: 1 residues within 4Å: Chain B: K.99 Ligand excluded by PLIP IOD.59: 3 residues within 4Å: Chain C: R.19 Chain G: K.96 Ligands: IOD.60 Ligand excluded by PLIP IOD.60: 3 residues within 4Å: Chain C: R.19 Chain G: A.100 Ligands: IOD.59 Ligand excluded by PLIP IOD.61: 5 residues within 4Å: Chain G: R.55, K.57, S.87, G.88, F.115 Ligand excluded by PLIP IOD.62: 5 residues within 4Å: Chain A: F.61, M.62, R.92, K.96 Chain G: L.17 Ligand excluded by PLIP IOD.63: 3 residues within 4Å: Chain G: P.113, V.114, G.117 Ligand excluded by PLIP IOD.64: 2 residues within 4Å: Chain A: F.30 Chain G: R.55 Ligand excluded by PLIP IOD.67: 5 residues within 4Å: Chain B: T.16, L.17 Chain H: M.62, R.92, K.96 Ligand excluded by PLIP IOD.68: 3 residues within 4Å: Chain D: F.30, F.61 Chain H: R.55 Ligand excluded by PLIP IOD.69: 2 residues within 4Å: Chain H: P.113, G.117 Ligand excluded by PLIP IOD.70: 1 residues within 4Å: Ligands: IOD.35 Ligand excluded by PLIP IOD.71: 5 residues within 4Å: Chain H: R.55, K.57, S.87, G.88, F.115 Ligand excluded by PLIP IOD.72: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IOD.73: 2 residues within 4Å: Chain H: K.96 Ligands: IOD.13 Ligand excluded by PLIP IOD.74: 2 residues within 4Å: Chain H: Q.95, K.99 Ligand excluded by PLIP IOD.75: 1 residues within 4Å: Chain D: K.99 Ligand excluded by PLIP

12 x GOL: GLYCEROL(Non-functional Binders)

GOL.8: 2 residues within 4Å: Chain A: Q.11, H.12 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.11 GOL.9: 4 residues within 4Å: Chain A: E.108, Q.109, V.111, Y.112 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.108 GOL.19: 4 residues within 4Å: Chain B: H.78, K.83, V.106, N.110 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:H.78, B:V.106, B:N.110 GOL.27: 2 residues within 4Å: Chain C: Q.11, H.12 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:Q.11 GOL.28: 4 residues within 4Å: Chain C: E.108, Q.109, V.111, Y.112 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:E.108 GOL.38: 4 residues within 4Å: Chain D: H.78, K.83, V.106, N.110 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:H.78, D:V.106, D:N.110 GOL.46: 2 residues within 4Å: Chain E: Q.11, H.12 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:Q.11 GOL.47: 4 residues within 4Å: Chain E: E.108, Q.109, V.111, Y.112 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:E.108 GOL.57: 4 residues within 4Å: Chain F: H.78, K.83, V.106, N.110 3 PLIP interactions: 3 interactions with chain F Hydrogen bonds: F:H.78, F:V.106, F:N.110 GOL.65: 2 residues within 4Å: Chain G: Q.11, H.12 1 PLIP interactions: 1 interactions with chain G Hydrogen bonds: G:Q.11 GOL.66: 4 residues within 4Å: Chain G: E.108, Q.109, V.111, Y.112 1 PLIP interactions: 1 interactions with chain G Hydrogen bonds: G:E.108 GOL.76: 4 residues within 4Å: Chain H: H.78, K.83, V.106, N.110 3 PLIP interactions: 3 interactions with chain H Hydrogen bonds: H:H.78, H:V.106, H:N.110

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Keller, J.P. et al., Structure of SulP Transporter STAS Domain from Vibrio Cholerae Refined to 1.9 Angstrom Resolution. To be Published

Release Date

2012-02-08

Peptides

Sulfate permease family protein: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

G
A

H
B

Sulfate permease family protein

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