SMTL ID : 4dhk.3 (4 other biounits)

Crystal structure of a deoxycytidine triphosphate deaminase (dCTP deaminase) from Burkholderia thailandensis

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

homo-hexamer

Ligands

21 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 6 residues within 4Å: Chain A: V.67, D.68, N.71, F.72, D.73, S.76 Ligand excluded by PLIP EDO.2: 3 residues within 4Å: Chain A: D.79, F.80, K.81 Ligand excluded by PLIP EDO.3: 4 residues within 4Å: Chain A: P.89, N.90 Chain E: P.89, N.90 Ligand excluded by PLIP EDO.4: 4 residues within 4Å: Chain A: R.102, I.103, E.132, E.134 Ligand excluded by PLIP EDO.5: 5 residues within 4Å: Chain A: T.127, F.129, W.133, V.137, T.138 Ligand excluded by PLIP EDO.6: 6 residues within 4Å: Chain B: V.67, D.68, N.71, F.72, D.73, S.76 Ligand excluded by PLIP EDO.7: 3 residues within 4Å: Chain B: D.79, F.80, K.81 Ligand excluded by PLIP EDO.8: 4 residues within 4Å: Chain B: P.89, N.90 Chain F: P.89, N.90 Ligand excluded by PLIP EDO.9: 4 residues within 4Å: Chain B: R.102, I.103, E.132, E.134 Ligand excluded by PLIP EDO.10: 5 residues within 4Å: Chain B: T.127, F.129, W.133, V.137, T.138 Ligand excluded by PLIP EDO.11: 6 residues within 4Å: Chain C: V.67, D.68, N.71, F.72, D.73, S.76 Ligand excluded by PLIP EDO.12: 3 residues within 4Å: Chain C: D.79, F.80, K.81 Ligand excluded by PLIP EDO.13: 4 residues within 4Å: Chain C: P.89, N.90 Chain D: P.89, N.90 Ligand excluded by PLIP EDO.14: 4 residues within 4Å: Chain C: R.102, I.103, E.132, E.134 Ligand excluded by PLIP EDO.15: 5 residues within 4Å: Chain C: T.127, F.129, W.133, V.137, T.138 Ligand excluded by PLIP EDO.16: 7 residues within 4Å: Chain D: I.66, V.67, D.68, N.71, F.72, D.73, S.76 Ligand excluded by PLIP EDO.17: 8 residues within 4Å: Chain D: N.125, V.126, T.127, T.138, E.140 Chain F: S.115, A.118, R.119 Ligand excluded by PLIP EDO.18: 7 residues within 4Å: Chain E: I.66, V.67, D.68, N.71, F.72, D.73, S.76 Ligand excluded by PLIP EDO.19: 8 residues within 4Å: Chain D: S.115, A.118, R.119 Chain E: N.125, V.126, T.127, T.138, E.140 Ligand excluded by PLIP EDO.20: 7 residues within 4Å: Chain F: I.66, V.67, D.68, N.71, F.72, D.73, S.76 Ligand excluded by PLIP EDO.21: 8 residues within 4Å: Chain E: S.115, A.118, R.119 Chain F: N.125, V.126, T.127, T.138, E.140 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Baugh, L. et al., Combining functional and structural genomics to sample the essential Burkholderia structome. Plos One (2013)

Release Date

2012-03-14

Peptides

Deoxycytidine triphosphate deaminase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
B

E
B

F
B

Deoxycytidine triphosphate deaminase

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