SMTL ID : 4dk7.1

Crystal structure of LXR ligand binding domain in complex with full agonist 1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.45 Å

Oligo State

hetero-oligomer

Ligands

2 x 0KS: N-[4-(1,1,1,3,3,3-HEXAFLUORO-2-HYDROXYPROPAN-2-YL)PHENYL]-N-METHYLBENZENESULFONAMIDE(Non-covalent)

0KS.1: 20 residues within 4Å: Chain A: F.57, T.58, L.60, A.61, S.64, I.95, M.98, L.99, T.102, F.115, F.126, L.131, F.135, I.139, H.221, Q.224, L.228, L.235, L.239, W.243 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.60, A:I.95, A:F.115, A:F.115, A:L.131, A:F.135 0KS.8: 20 residues within 4Å: Chain C: F.54, F.57, T.58, L.60, A.61, S.64, I.95, M.98, L.99, T.102, F.115, F.126, L.131, F.135, H.221, Q.224, V.225, L.228, L.239, W.243 5 PLIP interactions: 5 interactions with chain C Hydrophobic interactions: C:L.60, C:I.95, C:F.115, C:F.135 Hydrogen bonds: C:T.102

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 3 residues within 4Å: Chain A: E.111, R.144 Ligands: CA.5 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.144

7 x CA: CALCIUM ION(Non-covalent)

CA.3: 2 residues within 4Å: Chain A: Q.21, E.67 No protein-ligand interaction detected (PLIP) CA.4: 1 residues within 4Å: Chain A: T.120 No protein-ligand interaction detected (PLIP) CA.5: 2 residues within 4Å: Chain A: E.111 Ligands: ACT.2 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.111, A:E.111 CA.6: 1 residues within 4Å: Chain A: D.125 No protein-ligand interaction detected (PLIP) CA.7: 1 residues within 4Å: Chain A: E.111 No protein-ligand interaction detected (PLIP) CA.9: 1 residues within 4Å: Chain C: E.101 No protein-ligand interaction detected (PLIP) CA.10: 2 residues within 4Å: Chain C: T.120, D.125 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kopecky, D.J. et al., Discovery of a new binding mode for a series of liver X receptor agonists. Bioorg.Med.Chem.Lett. (2012)

Release Date

2012-03-21

Peptides

Oxysterols receptor LXR-beta: AC
Nuclear receptor coactivator 1: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

Oxysterols receptor LXR-beta

Nuclear receptor coactivator 1

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