SMTL ID : 4dql.1 (2 other biounits)

Crystal structure of the FAD binding domain of cytochrome P450 BM3 in complex with NADP+

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

monomer

Ligands

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 23 residues within 4Å: Chain A: H.44, Q.101, R.142, R.172, Y.173, Y.174, S.175, T.190, V.191, S.192, V.194, E.197, A.198, W.199, Y.205, G.207, I.208, A.209, S.210, T.250, D.389, W.391, G.393 29 PLIP interactions: 29 interactions with chain A Hydrophobic interactions: A:W.391, A:W.391 Hydrogen bonds: A:Q.101, A:R.142, A:Y.173, A:Y.173, A:S.175, A:T.190, A:S.192, A:E.197, A:W.199, A:I.208, A:A.209, A:S.210, A:G.393 Water bridges: A:R.172, A:R.172, A:T.190, A:S.200, A:Y.205 Salt bridges: A:R.172, A:R.172 pi-Stacking: A:Y.174, A:W.199, A:W.199, A:W.199, A:Y.205, A:W.391, A:W.391

1 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.2: 16 residues within 4Å: Chain A: R.24, S.192, V.194, P.248, G.249, T.250, G.280, C.281, R.282, S.310, R.311, Y.319, Q.321, Q.349, M.350, G.393 23 PLIP interactions: 23 interactions with chain A Hydrophobic interactions: A:V.194 Hydrogen bonds: A:S.192, A:S.192, A:T.250, A:C.281, A:S.310, A:Q.321, A:Q.349 Water bridges: A:Q.18, A:Q.18, A:R.24, A:R.24, A:T.250, A:R.282, A:S.310, A:R.311, A:Y.319, A:Y.319 Salt bridges: A:R.24, A:R.24, A:R.311 pi-Stacking: A:Y.319, A:Y.319

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 3 residues within 4Å: Chain A: P.236, K.237, H.340 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.237 Water bridges: A:D.238, A:H.340 Salt bridges: A:H.340

1 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.4: 7 residues within 4Å: Chain A: L.335, D.336, W.376, Q.379, L.380, K.383, R.385 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.336, A:K.383, A:R.385

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.5: 7 residues within 4Å: Chain A: K.15, E.16, L.17, H.28, E.30, Y.290, E.293 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.15

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joyce, M.G. et al., The crystal structure of the FAD/NADPH-binding domain of flavocytochrome P450 BM3. Febs J. (2012)

Release Date

2012-03-07

Peptides

Bifunctional P-450/NADPH-P450 reductase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bifunctional P-450/NADPH-P450 reductase

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