SMTL ID : 4dql.2 (2 other biounits)

Crystal structure of the FAD binding domain of cytochrome P450 BM3 in complex with NADP+

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

monomer

Ligands

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 22 residues within 4Å: Chain A: H.44, Q.101, R.142, R.172, Y.173, Y.174, S.175, T.190, V.191, S.192, V.194, E.197, A.198, W.199, Y.205, G.207, I.208, A.209, S.210, D.389, W.391, G.393 31 PLIP interactions: 31 interactions with chain A Hydrophobic interactions: A:W.391, A:W.391 Hydrogen bonds: A:Q.101, A:R.142, A:Y.173, A:Y.173, A:S.175, A:T.190, A:S.192, A:E.197, A:W.199, A:I.208, A:A.209, A:S.210, A:G.393 Water bridges: A:R.170, A:R.170, A:R.172, A:T.190, A:S.200, A:Y.205 Salt bridges: A:R.172, A:R.172 pi-Stacking: A:Y.174, A:W.199, A:W.199, A:W.199, A:Y.205, A:W.391, A:W.391, A:W.391

1 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.2: 14 residues within 4Å: Chain A: R.24, S.192, G.249, T.250, G.280, C.281, R.282, S.310, R.311, K.317, Y.319, Q.321, Q.349, M.350 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:S.192, A:T.250, A:C.281, A:S.310, A:S.310, A:Q.321, A:Q.349 Water bridges: A:Q.18, A:R.24, A:R.24, A:R.24, A:R.282, A:V.320 Salt bridges: A:R.24, A:R.24, A:R.311, A:K.317 pi-Stacking: A:Y.319, A:Y.319

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 3 residues within 4Å: Chain A: R.106, T.107, R.110 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.106 Salt bridges: A:R.110

2 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.4: 8 residues within 4Å: Chain A: A.13, K.15, E.16, L.17, H.28, R.256, Y.290, E.293 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.15, A:E.293 Water bridges: A:K.15, A:E.16, A:Y.290 PG4.5: 4 residues within 4Å: Chain A: R.58, Y.202, G.203, E.204 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.204 Water bridges: A:G.201, A:G.203

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joyce, M.G. et al., The crystal structure of the FAD/NADPH-binding domain of flavocytochrome P450 BM3. Febs J. (2012)

Release Date

2012-03-07

Peptides

Bifunctional P-450/NADPH-P450 reductase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Bifunctional P-450/NADPH-P450 reductase

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