SMTL ID : 4drh.1 (1 other biounit)

Co-crystal structure of the PPIase domain of FKBP51, Rapamycin and the FRB fragment of mTOR at low pH

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-1-1-mer

Ligands

1 x RAP: RAPAMYCIN IMMUNOSUPPRESSANT DRUG(Non-covalent)

RAP.1: 23 residues within 4Å: Chain A: Y.61, F.71, D.72, H.75, F.81, G.88, Q.89, V.90, I.91, W.94, Y.117, K.125, I.126, F.134 Chain B: L.15, S.19, R.20, F.23, T.82, W.85, D.86, Y.89, F.92 31 PLIP interactions: 15 interactions with chain A, 16 interactions with chain B Hydrophobic interactions: A:Y.61, A:F.71, A:F.81, A:F.81, A:V.90, A:W.94, A:W.94, A:Y.117, A:I.126, B:L.15, B:F.23, B:F.23, B:F.23, B:F.23, B:F.23, B:W.85, B:W.85, B:Y.89, B:Y.89, B:Y.89, B:Y.89, B:F.92, B:F.92 Hydrogen bonds: A:Y.61, A:D.72, A:I.91, A:Y.117, A:K.125, B:S.19 Water bridges: A:G.88, B:T.82

11 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 7 residues within 4Å: Chain A: F.71, D.72, S.73, S.74, K.125 Chain B: K.79, T.82 9 PLIP interactions: 3 interactions with chain B, 6 interactions with chain A Hydrogen bonds: B:T.82, A:D.72, A:S.73, A:S.74 Water bridges: B:K.79, A:S.74, A:K.125 Salt bridges: B:K.79, A:K.125 SO4.3: 3 residues within 4Å: Chain A: K.62, K.64, K.70 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:K.62, A:K.64, A:K.70 SO4.4: 4 residues within 4Å: Chain A: S.17, P.18, T.19, K.64 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.19, A:T.19, A:T.19 Salt bridges: A:K.64 SO4.5: 2 residues within 4Å: Chain A: R.35, K.112 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.35, A:K.112 SO4.6: 4 residues within 4Å: Chain A: K.56, Y.58, K.142 Chain B: R.94 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:Y.58, B:R.94 Salt bridges: A:K.56, A:K.142 SO4.7: 6 residues within 4Å: Chain A: T.30, S.31, K.32, D.34, I.96, Y.115 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.31, A:K.32 SO4.8: 5 residues within 4Å: Chain A: E.16, P.18, K.42, H.108, E.135 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:K.42, A:H.108 SO4.9: 2 residues within 4Å: Chain B: T.48, L.49 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:L.49 SO4.10: 1 residues within 4Å: Chain B: K.29 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:K.29 SO4.11: 1 residues within 4Å: Chain B: R.94 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.94 SO4.12: 2 residues within 4Å: Chain B: Q.56, R.60 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.56 Salt bridges: B:R.60

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Marz, A.M. et al., Large FK506-Binding Proteins Shape the Pharmacology of Rapamycin. Mol.Cell.Biol. (2013)

Release Date

2013-02-06

Peptides

Peptidyl-prolyl cis-trans isomerase FKBP5: A
Serine/threonine-protein kinase mTOR: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Peptidyl-prolyl cis-trans isomerase FKBP5

Serine/threonine-protein kinase mTOR

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