SMTL ID : 8ppz.1

Co-crystal structure of FKBP12, compound 7 and the FRB fragment of mTOR

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

hetero-1-1-mer

Ligands

1 x 0AN: (1~{S},5~{S},6~{R})-10-[3,5-bis(chloranyl)phenyl]sulfonyl-5-[(~{E})-2-(2-chlorophenyl)ethenyl]-3-(pyridin-2-ylmethyl)-3,10-diazabicyclo[4.3.1]decan-2-one(Non-covalent)

0AN.1: 24 residues within 4Å: Chain A: Y.26, F.36, D.37, R.42, F.46, E.54, V.55, I.56, W.59, Y.82, H.87, I.90, I.91, L.97, F.99 Chain B: Y.22, F.23, V.78, L.81, T.82, W.85, D.86, Y.89 Ligands: CA.2 11 PLIP interactions: 10 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:Y.26, A:D.37, A:F.46, A:F.46, A:W.59, A:W.59, A:I.90, B:D.86 Hydrogen bonds: A:Y.26, A:I.56, A:Y.82

4 x CA: CALCIUM ION(Non-functional Binders)(Non-covalent)

CA.2: 3 residues within 4Å: Chain A: I.56, Y.82 Ligands: 0AN.1 No protein-ligand interaction detected (PLIP) CA.4: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) CA.5: 1 residues within 4Å: Chain B: R.60 No protein-ligand interaction detected (PLIP) CA.6: 3 residues within 4Å: Chain A: F.46 Chain B: K.79, T.82 No protein-ligand interaction detected (PLIP)

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.3: 1 residues within 4Å: Chain B: R.60 3 PLIP interactions: 3 interactions with chain B Water bridges: B:R.60, B:E.64 Salt bridges: B:R.60

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Meyners, C. et al., Co-crystal structure of FKBP12, compound 7 and the FRB fragment of mTOR. Chemrxiv (2023)

Release Date

2023-08-09

Peptides

Peptidyl-prolyl cis-trans isomerase FKBP1A: A
Serine/threonine-protein kinase mTOR: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Peptidyl-prolyl cis-trans isomerase FKBP1A

Serine/threonine-protein kinase mTOR

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