SMTL ID : 4dt6.1

Co-crystal structure of eIF4E with inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

1 x 6LI: 7-[2-(4-chlorophenoxy)ethyl]guanosine 5'-(dihydrogen phosphate)(Non-covalent)

6LI.1: 15 residues within 4Å: Chain A: F.71, W.79, L.83, D.113, Y.114, S.115, P.123, M.124, W.125, E.126, V.176, N.178, R.180, K.185, W.189 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:F.71, A:L.83, A:D.113, A:P.123, A:V.176 Hydrogen bonds: A:W.125 Water bridges: A:N.178 Salt bridges: A:E.126, A:R.180, A:K.185 pi-Stacking: A:W.79, A:W.79, A:W.125, A:W.125 pi-Cation interactions: A:W.79

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: W.69, K.88, D.119, G.120, E.122 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.88, A:G.120 Water bridges: A:W.69

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 3 residues within 4Å: Chain A: V.92, W.96, L.158 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:W.96 EDO.4: 3 residues within 4Å: Chain A: R.204, K.207, E.208 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.204 EDO.5: 4 residues within 4Å: Chain A: Y.99, L.104, D.150, R.151 No protein-ligand interaction detected (PLIP) EDO.6: 4 residues within 4Å: Chain A: D.94, A.97, L.98, H.101 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.94, A:H.101

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, X. et al., Structure-Guided Design, Synthesis, and Evaluation of Guanine-Derived Inhibitors of the eIF4E mRNA-Cap Interaction. J.Med.Chem. (2012)

Release Date

2012-04-11

Peptides

Eukaryotic translation initiation factor 4E: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Eukaryotic translation initiation factor 4E

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