SMTL ID : 4dvf.2 (1 other biounit)

Crystal structure of BACE1 with its inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x QSC- USC- PSA- LEU- ALA- ZAE- PLJ: METHYL (2S)-1-[(2R,5S,8S,12S,13S)-2,13-DIBENZYL-12-HYDROXY-3,5-DIMETHYL-8-(2-METHYLPROPYL)-15-(3-[(METHYLSULFONYL)AMINO]-5-{[(1R)-1-PHENYLETHYL]CARBAMOYL}PHENYL)-4,7,10,15-TETRAOXO-3,6,9,14-TETRAAZAPENTADECAN-1-OYL]PYRROLIDINE-2-CARBOXYLATE(Non-covalent)

QSC-USC-PSA-LEU-ALA-ZAE-PLJ.1: 32 residues within 4Å: Chain A: G.51, Q.52, G.53, L.70, D.72, G.74, V.109, P.110, Y.111, T.112, Q.113, F.148, I.150, W.155, I.158, I.166, R.168, W.237, Y.238, D.263, K.264, D.268, S.269, G.270, T.271, T.272, N.273, R.275, R.347, S.365, T.369, A.375 38 PLIP interactions: 38 interactions with chain A Hydrophobic interactions: A:L.70, A:L.70, A:V.109, A:P.110, A:P.110, A:Y.111, A:Y.111, A:Q.113, A:F.148, A:I.150, A:W.155, A:I.158, A:I.166, A:I.166, A:W.237, A:Y.238, A:T.271, A:A.375 Hydrogen bonds: A:D.72, A:G.74, A:G.74, A:P.110, A:T.112, A:Q.113, A:Q.113, A:R.168, A:G.270, A:G.270, A:T.272, A:N.273, A:N.273, A:R.275, A:S.365 Water bridges: A:T.112, A:K.264, A:T.271, A:T.272 Salt bridges: A:K.264

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, Y. et al., Cyanobacterial Peptides as a Prototype for the Design of Potent beta-Secretase Inhibitors and the Development of Selective Chemical Probes for Other Aspartic Proteases. J.Med.Chem. (2012)

Release Date

2013-01-16

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Beta-secretase 1

Related Entries With Identical Sequence