SMTL ID : 4ivt.1

Crystal structure of BACE1 with its inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x VTI: N-{N-[4-(acetylamino)-3,5-dichlorobenzyl]carbamimidoyl}-2-(1H-indol-1-yl)acetamide(Non-covalent)

VTI.1: 15 residues within 4Å: Chain A: L.70, D.72, Y.111, T.112, Q.113, G.114, K.147, F.148, I.150, W.155, D.268, G.270, T.271, R.275, T.369 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.70, A:I.150 Hydrogen bonds: A:Q.113, A:F.148 Salt bridges: A:D.72, A:D.268 pi-Stacking: A:Y.111, A:F.148 pi-Cation interactions: A:R.275

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: Y.91, Q.93, Q.95 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.93, A:Q.95, A:Q.95 SO4.3: 3 residues within 4Å: Chain A: F.39, H.185, P.187 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.217 Salt bridges: A:H.185

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zou, Y. et al., Virtual screening and structure-based discovery of indole acylguanidines as potent beta-secretase (BACE1) inhibitors. Molecules (2013)

Release Date

2013-11-13

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-secretase 1

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