SMTL ID : 4dw6.1

Novel N-phenyl-phenoxyacetamide derivatives as potential EthR inhibitors and ethionamide boosters. Discovery and optimization using High-Throughput Synthesis.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x 0MN: N-[4-(1,3-benzothiazol-2-yl)phenyl]-2-(3-methoxyphenoxy)acetamide(Non-covalent)

0MN.1: 19 residues within 4Å: Chain A: L.107, M.122, W.123, G.126, I.127, F.130, F.134, T.141, W.158, M.162, Y.168, T.169, V.172, N.196, N.199, E.200, L.203, F.204, W.227 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.107, A:I.127, A:F.130, A:F.130, A:F.134, A:W.158, A:Y.168, A:V.172, A:E.200, A:L.203 Hydrogen bonds: A:N.196, A:N.199 0MN.6: 19 residues within 4Å: Chain B: L.107, M.122, W.123, G.126, I.127, F.130, F.134, T.141, W.158, M.162, Y.168, T.169, V.172, N.196, N.199, E.200, L.203, F.204, W.227 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:L.107, B:I.127, B:F.130, B:F.130, B:F.134, B:W.158, B:Y.168, B:V.172, B:E.200, B:L.203 Hydrogen bonds: B:N.196, B:N.199

2 x NH4: AMMONIUM ION(Non-functional Binders)

NH4.2: 2 residues within 4Å: Chain A: E.132, G.135 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.132 NH4.7: 2 residues within 4Å: Chain B: E.132, G.135 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:G.135

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 6 residues within 4Å: Chain A: D.174, R.177, T.185, L.186, P.187, A.188 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.177, A:A.188 Water bridges: A:D.174, A:R.184 GOL.4: 5 residues within 4Å: Chain A: S.66, V.67, D.68, R.78, K.88 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:V.67, A:D.68, A:R.78, A:R.78, A:K.88, A:K.88 GOL.5: 2 residues within 4Å: Chain A: Y.82, P.86 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.82 GOL.8: 6 residues within 4Å: Chain B: D.174, R.177, T.185, L.186, P.187, A.188 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.177, B:A.188 Water bridges: B:D.174, B:R.184 GOL.9: 5 residues within 4Å: Chain B: S.66, V.67, D.68, R.78, K.88 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:V.67, B:D.68, B:D.68, B:R.78, B:R.78, B:K.88, B:K.88 GOL.10: 2 residues within 4Å: Chain B: Y.82, P.86 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Y.82

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Flipo, M. et al., Discovery of novel N-phenylphenoxyacetamide derivatives as EthR inhibitors and ethionamide boosters by combining high-throughput screening and synthesis. J.Med.Chem. (2012)

Release Date

2013-03-27

Peptides

HTH-type transcriptional regulator EthR: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

HTH-type transcriptional regulator EthR

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