SMTL ID : 4e03.3 (2 other biounits)

Structure of ParF-ADP form 2

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.45 Å

Oligo State

homo-dimer

Ligands

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 15 residues within 4Å: Chain A: G.11, G.12, S.13, G.14, K.15, T.16, T.17, R.139, I.166, T.167, Q.168, R.169, Y.172, V.173 Ligands: MG.2 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:G.12, A:S.13, A:G.14, A:K.15, A:T.16, A:T.17, A:T.17, A:R.139, A:R.139, A:T.167, A:R.169 Water bridges: A:T.16, A:T.16, A:T.16, A:D.82 Salt bridges: A:K.15 ADP.3: 15 residues within 4Å: Chain B: G.11, G.12, S.13, G.14, K.15, T.16, T.17, R.139, I.166, T.167, Q.168, R.169, Y.172, V.173 Ligands: MG.4 13 PLIP interactions: 13 interactions with chain B Hydrogen bonds: B:G.12, B:S.13, B:G.14, B:K.15, B:T.16, B:T.17, B:T.17, B:T.167, B:R.169 Water bridges: B:T.16, B:T.16, B:D.82 Salt bridges: B:K.15

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain A: T.16 Ligands: ADP.1 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:T.16, H2O.1, H2O.1, H2O.1, H2O.3 MG.4: 2 residues within 4Å: Chain B: T.16 Ligands: ADP.3 5 PLIP interactions: 1 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:T.16, H2O.3, H2O.3, H2O.3, H2O.4

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schumacher, M.A. et al., Structural Mechanism of ATP-induced Polymerization of the Partition Factor ParF: IMPLICATIONS FOR DNA SEGREGATION. J.Biol.Chem. (2012)

Release Date

2012-06-13

Peptides

Plasmid partitioning protein ParF: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Plasmid partitioning protein ParF

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