SMTL ID : 4e09.1

Structure of ParF-AMPPCP, I422 form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.99 Å

Oligo State

homo-dimer

Ligands

2 x ACP: PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER(Non-covalent)

ACP.1: 23 residues within 4Å: Chain A: G.11, G.12, S.13, G.14, K.15, T.16, T.17, D.39, S.43, D.82, G.83, T.138, R.139, I.166, T.167, Q.168, R.169, Y.172, V.173 Chain B: K.10, T.106, S.108, D.111 21 PLIP interactions: 16 interactions with chain A, 5 interactions with chain B Hydrogen bonds: A:G.12, A:S.13, A:G.14, A:K.15, A:K.15, A:T.16, A:T.16, A:T.17, A:T.17, A:D.39, A:D.39, A:S.43, A:R.139, A:R.139, A:T.167, A:R.169, B:K.10, B:T.106, B:T.106, B:S.108 Salt bridges: B:K.10 ACP.3: 23 residues within 4Å: Chain A: K.10, T.106, S.108, D.111 Chain B: G.11, G.12, S.13, G.14, K.15, T.16, T.17, D.39, S.43, D.82, G.83, T.138, R.139, I.166, T.167, Q.168, R.169, Y.172, V.173 22 PLIP interactions: 5 interactions with chain A, 17 interactions with chain B Hydrogen bonds: A:K.10, A:T.106, A:S.108, A:D.111, B:G.12, B:S.13, B:G.14, B:K.15, B:K.15, B:T.16, B:T.16, B:T.17, B:T.17, B:D.39, B:D.39, B:D.39, B:S.43, B:R.139, B:R.139, B:T.167, B:R.169 Salt bridges: A:K.10

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 1 residues within 4Å: Chain A: K.52 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.52 SO4.4: 1 residues within 4Å: Chain B: K.52 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:K.52

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schumacher, M.A. et al., Structural Mechanism of ATP-induced Polymerization of the Partition Factor ParF: IMPLICATIONS FOR DNA SEGREGATION. J.Biol.Chem. (2012)

Release Date

2012-06-13

Peptides

Plasmid partitioning protein ParF: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Plasmid partitioning protein ParF

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