SMTL ID : 4e7v.17 (19 other biounits)

The structure of R6 bovine insulin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

hetero-6-6-mer

Ligands

6 x CRS: M-CRESOL(Non-covalent)

CRS.1: 9 residues within 4Å: Chain A: C.6, S.9, V.10, C.11, L.16 Chain B: L.11, A.14 Chain J: H.5 Chain L: L.17 6 PLIP interactions: 2 interactions with chain B, 1 interactions with chain J, 2 interactions with chain A, 1 interactions with chain L Hydrophobic interactions: B:L.11, B:A.14, A:L.16, L:L.17 pi-Cation interactions: J:H.5 Hydrogen bonds: A:C.11 CRS.4: 9 residues within 4Å: Chain C: C.6, S.9, V.10, C.11, L.16 Chain D: L.11, A.14 Chain F: L.17 Chain H: H.5 6 PLIP interactions: 2 interactions with chain D, 1 interactions with chain H, 2 interactions with chain C, 1 interactions with chain F Hydrophobic interactions: D:L.11, D:A.14, C:L.16, F:L.17 pi-Cation interactions: H:H.5 Hydrogen bonds: C:C.11 CRS.7: 9 residues within 4Å: Chain B: H.5 Chain D: L.17 Chain E: C.6, S.9, V.10, C.11, L.16 Chain F: L.11, A.14 6 PLIP interactions: 2 interactions with chain F, 1 interactions with chain D, 1 interactions with chain B, 2 interactions with chain E Hydrophobic interactions: F:L.11, F:A.14, D:L.17, E:L.16 pi-Cation interactions: B:H.5 Hydrogen bonds: E:C.11 CRS.10: 9 residues within 4Å: Chain G: C.6, S.9, V.10, C.11, L.16 Chain H: L.11, A.14 Chain J: L.17 Chain L: H.5 6 PLIP interactions: 1 interactions with chain L, 2 interactions with chain G, 2 interactions with chain H, 1 interactions with chain J pi-Cation interactions: L:H.5 Hydrophobic interactions: G:L.16, H:L.11, H:A.14, J:L.17 Hydrogen bonds: G:C.11 CRS.13: 9 residues within 4Å: Chain F: H.5 Chain H: L.17 Chain I: C.6, S.9, V.10, C.11, L.16 Chain J: L.11, A.14 6 PLIP interactions: 1 interactions with chain F, 2 interactions with chain J, 1 interactions with chain H, 2 interactions with chain I pi-Cation interactions: F:H.5 Hydrophobic interactions: J:L.11, J:A.14, H:L.17, I:L.16 Hydrogen bonds: I:C.11 CRS.16: 9 residues within 4Å: Chain B: L.17 Chain D: H.5 Chain K: C.6, S.9, V.10, C.11, L.16 Chain L: L.11, A.14 6 PLIP interactions: 2 interactions with chain K, 2 interactions with chain L, 1 interactions with chain B, 1 interactions with chain D Hydrophobic interactions: K:L.16, L:L.11, L:A.14, B:L.17 Hydrogen bonds: K:C.11 pi-Cation interactions: D:H.5

6 x ZN: ZINC ION(Non-covalent)

ZN.2: 8 residues within 4Å: Chain B: H.10 Chain F: H.10 Chain J: H.10 Ligands: CL.3, ZN.8, CL.9, ZN.14, CL.15 3 PLIP interactions: 1 interactions with chain B, 1 interactions with chain F, 1 interactions with chain J Metal complexes: B:H.10, F:H.10, J:H.10 ZN.5: 8 residues within 4Å: Chain D: H.10 Chain H: H.10 Chain L: H.10 Ligands: CL.6, ZN.11, CL.12, ZN.17, CL.18 3 PLIP interactions: 1 interactions with chain D, 1 interactions with chain L, 1 interactions with chain H Metal complexes: D:H.10, L:H.10, H:H.10 ZN.8: 8 residues within 4Å: Chain B: H.10 Chain F: H.10 Chain J: H.10 Ligands: ZN.2, CL.3, CL.9, ZN.14, CL.15 3 PLIP interactions: 1 interactions with chain B, 1 interactions with chain F, 1 interactions with chain J Metal complexes: B:H.10, F:H.10, J:H.10 ZN.11: 8 residues within 4Å: Chain D: H.10 Chain H: H.10 Chain L: H.10 Ligands: ZN.5, CL.6, CL.12, ZN.17, CL.18 3 PLIP interactions: 1 interactions with chain D, 1 interactions with chain L, 1 interactions with chain H Metal complexes: D:H.10, L:H.10, H:H.10 ZN.14: 8 residues within 4Å: Chain B: H.10 Chain F: H.10 Chain J: H.10 Ligands: ZN.2, CL.3, ZN.8, CL.9, CL.15 3 PLIP interactions: 1 interactions with chain B, 1 interactions with chain F, 1 interactions with chain J Metal complexes: B:H.10, F:H.10, J:H.10 ZN.17: 8 residues within 4Å: Chain D: H.10 Chain H: H.10 Chain L: H.10 Ligands: ZN.5, CL.6, ZN.11, CL.12, CL.18 3 PLIP interactions: 1 interactions with chain L, 1 interactions with chain H, 1 interactions with chain D Metal complexes: L:H.10, H:H.10, D:H.10

6 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 11 residues within 4Å: Chain B: L.6, H.10 Chain F: L.6, H.10 Chain J: L.6, H.10 Ligands: ZN.2, ZN.8, CL.9, ZN.14, CL.15 Ligand excluded by PLIP CL.6: 11 residues within 4Å: Chain D: L.6, H.10 Chain H: L.6, H.10 Chain L: L.6, H.10 Ligands: ZN.5, ZN.11, CL.12, ZN.17, CL.18 Ligand excluded by PLIP CL.9: 11 residues within 4Å: Chain B: L.6, H.10 Chain F: L.6, H.10 Chain J: L.6, H.10 Ligands: ZN.2, CL.3, ZN.8, ZN.14, CL.15 Ligand excluded by PLIP CL.12: 11 residues within 4Å: Chain D: L.6, H.10 Chain H: L.6, H.10 Chain L: L.6, H.10 Ligands: ZN.5, CL.6, ZN.11, ZN.17, CL.18 Ligand excluded by PLIP CL.15: 11 residues within 4Å: Chain B: L.6, H.10 Chain F: L.6, H.10 Chain J: L.6, H.10 Ligands: ZN.2, CL.3, ZN.8, CL.9, ZN.14 Ligand excluded by PLIP CL.18: 11 residues within 4Å: Chain D: L.6, H.10 Chain H: L.6, H.10 Chain L: L.6, H.10 Ligands: ZN.5, CL.6, ZN.11, CL.12, ZN.17 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Frankar, C.G. et al., The structures of T(6), T(3)R(3) and R(6) bovine insulin: combining X-ray diffraction and absorption spectroscopy. Acta Crystallogr.,Sect.D (2012)

Release Date

2012-04-04

Peptides

Insulin A chain: ACEGIK
Insulin B chain: BDFHJL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
Y

C
1

E
Y

G
1

I
Y

K
1

B
Z

D
2

F
Z

H
2

J
Z

L
2

Insulin A chain

Insulin B chain

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