SMTL ID : 1mpj.3 (6 other biounits)

X-RAY CRYSTALLOGRAPHIC STUDIES ON HEXAMERIC INSULINS IN THE PRESENCE OF HELIX-STABILIZING AGENTS, THIOCYANATE, METHYLPARABEN AND PHENOL

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-6-6-mer

Ligands

3 x IPH: PHENOL(Non-covalent)

IPH.1: 7 residues within 4Å: Chain A: C.6, S.9, I.10, C.11, L.16 Chain B: L.11 Chain F: H.5 5 PLIP interactions: 3 interactions with chain A, 1 interactions with chain F, 1 interactions with chain B Hydrophobic interactions: A:L.16, B:L.11 Hydrogen bonds: A:C.6, A:C.11 pi-Stacking: F:H.5 IPH.6: 7 residues within 4Å: Chain E: C.6, S.9, I.10, C.11, L.16 Chain F: L.11 Chain J: H.5 5 PLIP interactions: 3 interactions with chain E, 1 interactions with chain F, 1 interactions with chain J Hydrophobic interactions: E:L.16, F:L.11 Hydrogen bonds: E:C.6, E:C.11 pi-Stacking: J:H.5 IPH.11: 7 residues within 4Å: Chain B: H.5 Chain I: C.6, S.9, I.10, C.11, L.16 Chain J: L.11 5 PLIP interactions: 3 interactions with chain I, 1 interactions with chain J, 1 interactions with chain B Hydrophobic interactions: I:L.16, J:L.11 Hydrogen bonds: I:C.6, I:C.11 pi-Stacking: B:H.5

6 x ZN: ZINC ION(Non-covalent)

ZN.2: 8 residues within 4Å: Chain B: H.10 Chain F: H.10 Chain J: H.10 Ligands: CL.3, ZN.7, CL.8, ZN.12, CL.13 3 PLIP interactions: 1 interactions with chain B, 1 interactions with chain F, 1 interactions with chain J Metal complexes: B:H.10, F:H.10, J:H.10 ZN.4: 8 residues within 4Å: Chain D: H.10 Chain H: H.10 Chain L: H.10 Ligands: CL.5, ZN.9, CL.10, ZN.14, CL.15 3 PLIP interactions: 1 interactions with chain H, 1 interactions with chain L, 1 interactions with chain D Metal complexes: H:H.10, L:H.10, D:H.10 ZN.7: 8 residues within 4Å: Chain B: H.10 Chain F: H.10 Chain J: H.10 Ligands: ZN.2, CL.3, CL.8, ZN.12, CL.13 3 PLIP interactions: 1 interactions with chain B, 1 interactions with chain F, 1 interactions with chain J Metal complexes: B:H.10, F:H.10, J:H.10 ZN.9: 8 residues within 4Å: Chain D: H.10 Chain H: H.10 Chain L: H.10 Ligands: ZN.4, CL.5, CL.10, ZN.14, CL.15 3 PLIP interactions: 1 interactions with chain H, 1 interactions with chain L, 1 interactions with chain D Metal complexes: H:H.10, L:H.10, D:H.10 ZN.12: 8 residues within 4Å: Chain B: H.10 Chain F: H.10 Chain J: H.10 Ligands: ZN.2, CL.3, ZN.7, CL.8, CL.13 3 PLIP interactions: 1 interactions with chain B, 1 interactions with chain F, 1 interactions with chain J Metal complexes: B:H.10, F:H.10, J:H.10 ZN.14: 8 residues within 4Å: Chain D: H.10 Chain H: H.10 Chain L: H.10 Ligands: ZN.4, CL.5, ZN.9, CL.10, CL.15 3 PLIP interactions: 1 interactions with chain H, 1 interactions with chain L, 1 interactions with chain D Metal complexes: H:H.10, L:H.10, D:H.10

6 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 8 residues within 4Å: Chain B: H.10 Chain F: H.10 Chain J: H.10 Ligands: ZN.2, ZN.7, CL.8, ZN.12, CL.13 Ligand excluded by PLIP CL.5: 8 residues within 4Å: Chain D: H.10 Chain H: H.10 Chain L: H.10 Ligands: ZN.4, ZN.9, CL.10, ZN.14, CL.15 Ligand excluded by PLIP CL.8: 8 residues within 4Å: Chain B: H.10 Chain F: H.10 Chain J: H.10 Ligands: ZN.2, CL.3, ZN.7, ZN.12, CL.13 Ligand excluded by PLIP CL.10: 8 residues within 4Å: Chain D: H.10 Chain H: H.10 Chain L: H.10 Ligands: ZN.4, CL.5, ZN.9, ZN.14, CL.15 Ligand excluded by PLIP CL.13: 8 residues within 4Å: Chain B: H.10 Chain F: H.10 Chain J: H.10 Ligands: ZN.2, CL.3, ZN.7, CL.8, ZN.12 Ligand excluded by PLIP CL.15: 8 residues within 4Å: Chain D: H.10 Chain H: H.10 Chain L: H.10 Ligands: ZN.4, CL.5, ZN.9, CL.10, ZN.14 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Whittingham, J.L. et al., X-ray crystallographic studies on hexameric insulins in the presence of helix-stabilizing agents, thiocyanate, methylparaben, and phenol. Biochemistry (1995)

Release Date

1996-01-29

Peptides

PHENOL INSULIN: ACEGIK
PHENOL INSULIN: BDFHJL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
A

G
C

I
A

K
C

B
B

D
D

F
B

H
D

J
B

L
D

PHENOL INSULIN

PHENOL INSULIN

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