SMTL ID : 4e9o.1

Vaccinia D8L ectodomain structure

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.42 Å

Oligo State

monomer

Ligands

12 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 2 residues within 4Å: Chain A: Y.155, N.158 Ligand excluded by PLIP IOD.2: 1 residues within 4Å: Chain A: K.99 Ligand excluded by PLIP IOD.3: 2 residues within 4Å: Chain A: Q.132, D.194 Ligand excluded by PLIP IOD.4: 1 residues within 4Å: Chain A: N.136 Ligand excluded by PLIP IOD.5: 1 residues within 4Å: Chain A: S.234 Ligand excluded by PLIP IOD.6: 3 residues within 4Å: Chain A: E.30, G.50 Ligands: IOD.12 Ligand excluded by PLIP IOD.7: 5 residues within 4Å: Chain A: Y.104, K.108, T.173, S.177 Ligands: IOD.10 Ligand excluded by PLIP IOD.8: 2 residues within 4Å: Chain A: V.129, Q.132 Ligand excluded by PLIP IOD.9: 2 residues within 4Å: Chain A: S.65, H.67 Ligand excluded by PLIP IOD.10: 5 residues within 4Å: Chain A: H.67, V.94, Y.104, T.173 Ligands: IOD.7 Ligand excluded by PLIP IOD.11: 2 residues within 4Å: Chain A: N.9, V.84 Ligand excluded by PLIP IOD.12: 3 residues within 4Å: Chain A: E.30, Y.51 Ligands: IOD.6 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Matho, M.H. et al., Structural and Biochemical Characterization of the Vaccinia Virus Envelope Protein D8 and Its Recognition by the Antibody LA5. J.Virol. (2012)

Release Date

2012-06-06

Peptides

IMV membrane protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
X

IMV membrane protein

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