SMTL ID : 4etq.1 (1 other biounit)

Vaccinia virus D8L IMV envelope protein in complex with Fab of murine IgG2a LA5

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-1-1-1-mer

Ligands

2 x SCN: THIOCYANATE ION(Non-functional Binders)

SCN.1: 7 residues within 4Å: Chain A: W.47, R.59, L.60, N.61, Q.62 Chain B: Y.93, P.94 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.62 SCN.4: 2 residues within 4Å: Chain A: D.107 Chain B: S.55 No protein-ligand interaction detected (PLIP)

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 5 residues within 4Å: Chain A: P.9, E.154, P.155, P.206, A.207 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.154 Water bridges: A:A.207

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 7 residues within 4Å: Chain A: V.169, H.170 Chain B: T.163, D.164, Q.165, D.166, T.171 6 PLIP interactions: 3 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:V.169, A:H.170, B:T.163, B:T.171 Water bridges: A:T.171, B:Q.165

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 3 residues within 4Å: Chain C: F.154, Y.155, N.158 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Matho, M.H. et al., Structural and Biochemical Characterization of the Vaccinia Virus Envelope Protein D8 and Its Recognition by the Antibody LA5. J.Virol. (2012)

Release Date

2012-06-06

Peptides

anti-vaccinia D8L antigen murine monoclonal IgG2a antibody LA5, heavy chain: A
anti-vaccinia D8L antigen murine monoclonal IgG2a antibody LA5, light chain: B
IMV membrane protein: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

C
C

anti-vaccinia D8L antigen murine monoclonal IgG2a antibody LA5, heavy chain

anti-vaccinia D8L antigen murine monoclonal IgG2a antibody LA5, light chain

IMV membrane protein

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