SMTL ID : 4eat.2 (1 other biounit)

Crystal structure of a benzoate coenzyme A ligase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x BEZ: BENZOIC ACID(Non-covalent)

BEZ.1: 13 residues within 4Å: Chain A: A.227, Y.228, A.302, G.303, G.325, I.326, G.327, S.328, T.329, L.332, H.333, I.334, K.427 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:A.227, A:Y.228, A:A.302, A:I.334 Hydrogen bonds: A:G.303, A:G.327 Water bridges: A:K.427, A:K.427, A:G.430 Salt bridges: A:K.427 pi-Stacking: A:H.333

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 8 residues within 4Å: Chain A: S.182, G.183, S.184, T.185, G.186, R.187, P.188, S.434 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.183, A:R.187 Water bridges: A:K.189, A:S.434, A:E.437 GOL.3: 7 residues within 4Å: Chain A: L.71, T.95, L.96, K.223, G.248, R.250, P.251 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.95, A:T.95 GOL.4: 5 residues within 4Å: Chain A: E.439, V.443, E.450, A.451, R.515 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.451, A:R.515

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 4 residues within 4Å: Chain A: E.358, L.359, V.367, R.410 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.359, A:V.367

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Thornburg, C.K. et al., Kinetically and Crystallographically Guided Mutations of a Benzoate CoA Ligase (BadA) Elucidate Mechanism and Expand Substrate Permissivity. Biochemistry (2015)

Release Date

2013-03-27

Peptides

Benzoate-coenzyme A ligase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Benzoate-coenzyme A ligase

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