SMTL ID : 4rmn.2 (2 other biounits)

Crystal structure of a benzoate coenzyme A ligase with 2-Thiophene Carboxylic acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.72 Å

Oligo State

monomer

Ligands

2 x C21: THIOPHENE-2-CARBOXYLIC ACID(Non-covalent)

C21.1: 11 residues within 4Å: Chain A: A.227, Y.228, A.302, G.303, I.326, G.327, S.328, L.332, H.333, I.334, K.427 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:Y.228, A:Y.228, A:A.302, A:I.334 Hydrogen bonds: A:G.303, A:G.327 Water bridges: A:E.304, A:K.427 Salt bridges: A:K.427 pi-Stacking: A:H.333 C21.2: 9 residues within 4Å: Chain A: A.221, A.222, F.226, Y.228, G.274, A.275, A.302, S.429, G.430 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:A.222, A:Y.228, A:A.275 Hydrogen bonds: A:A.275 Water bridges: A:A.221, A:S.429 pi-Stacking: A:F.226

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 9 residues within 4Å: Chain A: A.305, L.306, D.324, G.346, T.347, T.348, Y.416, T.417, Y.418 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.306, A:D.324, A:T.348, A:Y.418

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Thornburg, C.K. et al., Kinetically and Crystallographically Guided Mutations of a Benzoate CoA Ligase (BadA) Elucidate Mechanism and Expand Substrate Permissivity. Biochemistry (2015)

Release Date

2015-09-30

Peptides

Benzoate-coenzyme A ligase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Benzoate-coenzyme A ligase

Related Entries With Identical Sequence