SMTL ID : 4efp.1 (1 other biounit)

Bombyx mori lipoprotein 7 isolated from its natural source at 1.33 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.33 Å

Oligo State

monomer

Ligands

1 x SCN: THIOCYANATE ION(Non-functional Binders)

SCN.1: 5 residues within 4Å: Chain A: K.37, K.38, S.39, E.40 Ligands: CD.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.39 Water bridges: A:K.37

1 x CD: CADMIUM ION(Non-covalent)

CD.2: 3 residues within 4Å: Chain A: K.37, E.40 Ligands: SCN.1 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:K.37, A:E.40, A:E.40, H2O.200

1 x K: POTASSIUM ION(Non-covalent)

K.3: 1 residues within 4Å: Chain A: E.36 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:E.36, H2O.171, H2O.257, H2O.262, H2O.264

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 3 residues within 4Å: Chain A: D.71, R.74, D.75 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.74 EDO.5: 3 residues within 4Å: Chain A: Y.62, L.134, W.135 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.62, A:W.135 Water bridges: A:W.135 EDO.6: 4 residues within 4Å: Chain A: E.136, F.176, Q.179, R.198 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.179, A:Q.179, A:R.198

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.7: 9 residues within 4Å: Chain A: N.160, D.164, T.205, L.206, S.207, R.208, W.219, Y.221, Y.232 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.160, A:D.164, A:Y.232 Water bridges: A:L.206, A:R.208, A:R.208

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pietrzyk, A.J. et al., High-resolution structure of Bombyx mori lipoprotein 7: crystallographic determination of the identity of the protein and its potential role in detoxification. Acta Crystallogr.,Sect.D (2012)

Release Date

2012-08-29

Peptides

30kDa protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

30kDa protein

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