SMTL ID : 4em9.1 (2 other biounits)

Human PPAR gamma in complex with nonanoic acids

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

3 x KNA: nonanoic acid(Non-covalent)

KNA.1: 10 residues within 4Å: Chain A: C.83, R.86, S.87, A.90, I.124, L.128, L.131, M.162 Ligands: KNA.3, GOL.4 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:R.86, A:A.90 Salt bridges: A:R.86 KNA.2: 10 residues within 4Å: Chain A: F.80, C.83, S.87, H.121, L.154, F.158, F.161, H.247, L.251, Y.271 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.80, A:L.154, A:F.161 Hydrogen bonds: A:S.87, A:Y.271 Salt bridges: A:H.121, A:H.247 KNA.3: 7 residues within 4Å: Chain A: R.86, L.128, L.131, L.138, I.139, S.140 Ligands: KNA.1 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:R.86, A:I.139 Water bridges: A:R.86, A:E.141

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 9 residues within 4Å: Chain A: F.24, P.25, L.26, R.86, E.93, M.127, S.130, L.131 Ligands: KNA.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.26, A:R.86, A:E.93 Water bridges: A:S.130

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liberato, M.V. et al., Medium chain fatty acids are selective peroxisome proliferator activated receptor (PPAR) Gamma activators and pan-PPAR partial agonists. Plos One (2012)

Release Date

2013-03-06

Peptides

Peroxisome proliferator-activated receptor gamma: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peroxisome proliferator-activated receptor gamma

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