SMTL ID : 4evi.1

Crystal Structure Analysis of Coniferyl Alcohol 9-O-Methyltransferase from Linum Nodiflorum in Complex with Coniferyl Alcohol 9-Methyl Ether and S -Adenosyl-L-Homocysteine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.02 Å

Oligo State

homo-dimer

Ligands

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.1: 19 residues within 4Å: Chain A: Y.182, M.199, S.203, G.228, G.229, G.230, D.251, L.252, V.255, G.271, N.272, M.273, F.274, K.287, W.288, V.289, D.292, W.293 Ligands: C9M.2 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:G.228, A:G.230, A:N.272, A:M.273, A:K.287, A:K.287 Water bridges: A:S.203, A:T.234, A:K.287, A:D.292 Salt bridges: A:K.287 pi-Stacking: A:Y.182

1 x C9M: 2-methoxy-4-[(1E)-3-methoxyprop-1-en-1-yl]phenol(Non-covalent)

C9M.2: 16 residues within 4Å: Chain A: L.138, C.141, S.142, L.147, Y.182, F.195, M.199, W.288, D.292, L.342, L.345, F.346, F.349 Chain B: F.40, L.41 Ligands: SAH.1 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.138, A:W.288, A:W.288, A:L.342, A:F.346, A:F.346 Hydrogen bonds: A:S.142

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 4 residues within 4Å: Chain A: R.208, V.237, E.240, T.241 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.208, A:E.240 GOL.5: 8 residues within 4Å: Chain A: G.337, I.341 Chain B: H.38, N.45, M.93, H.96, L.97 Ligands: GOL.7 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.45, B:N.45, B:H.96 GOL.6: 8 residues within 4Å: Chain A: D.31 Chain B: S.329, C.330, S.335, G.378, G.379, L.380, R.381 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:G.379, B:L.380, B:R.381 Water bridges: B:G.378, B:R.381 GOL.7: 9 residues within 4Å: Chain A: H.38, H.39, G.42, N.45 Chain B: H.38, H.39, G.42, N.45 Ligands: GOL.5 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:H.38, B:H.39, B:N.45, A:H.38, A:N.45

1 x N7I: 4-[(1E)-3-hydroxyprop-1-en-1-yl]-2-methoxyphenol(Non-covalent)

N7I.4: 13 residues within 4Å: Chain A: F.40 Chain B: L.138, C.141, S.142, L.147, M.199, W.288, C.291, D.292, L.342, L.345, F.346, F.349 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:W.288, B:W.288, B:L.342, B:L.345, B:F.346, B:F.346 Hydrogen bonds: B:S.142, B:D.292

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wolters, S. et al., Structural analysis of coniferyl alcohol 9-O-methyltransferase from Linum nodiflorum reveals a novel active-site environment. Acta Crystallogr.,Sect.D (2013)

Release Date

2013-05-01

Peptides

Coniferyl alcohol 9-O-methyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Coniferyl alcohol 9-O-methyltransferase

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