SMTL ID : 4ews.1

Crystal structure of cholesteryl ester transfer protein in complex with inhibitors

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.59 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- MAN- FUC: alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG-NAG-MAN-FUC.1: 8 residues within 4Å: Chain A: N.396, L.397, T.398, E.399, S.401, S.402, E.403, Q.406 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.401, A:S.401, A:E.403, A:Q.406

2 x 2OB: CHOLESTERYL OLEATE(Non-covalent)

2OB.2: 14 residues within 4Å: Chain A: I.15, L.20, L.23, V.30, I.82, V.84, I.125, T.127, S.191, F.441, F.461, F.463 Ligands: DLP.4, 0RP.8 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:I.15, A:L.23, A:V.30, A:I.82, A:V.84, A:I.125, A:F.441, A:F.461, A:F.461 2OB.3: 32 residues within 4Å: Chain A: F.270, F.292, V.295, L.296, V.321, V.323, V.338, V.340, V.346, F.348, I.367, T.369, V.371, A.373, L.382, M.412, I.413, V.416, G.417, V.421, M.422, L.425, F.429, M.433, V.438, I.443, P.446, I.448, L.455, L.457, M.459 Ligands: DLP.4 28 PLIP interactions: 28 interactions with chain A Hydrophobic interactions: A:F.270, A:V.295, A:L.296, A:V.321, A:V.321, A:V.323, A:V.323, A:V.338, A:V.338, A:V.340, A:V.346, A:F.348, A:I.367, A:T.369, A:V.371, A:I.413, A:V.416, A:V.421, A:V.421, A:F.429, A:F.429, A:F.429, A:V.438, A:I.443, A:P.446, A:I.448, A:L.455, A:L.457

1 x DLP: 1,2-DILINOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE(Non-covalent)

DLP.4: 25 residues within 4Å: Chain A: I.205, L.206, S.207, D.208, I.211, L.273, A.277, R.282, L.283, M.284, L.285, V.323, C.325, P.329, I.331, S.342, V.344, V.421, R.424, L.425, V.428, F.429, L.432 Ligands: 2OB.2, 2OB.3 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:D.208, A:I.211, A:L.273, A:L.273, A:L.283, A:L.285, A:V.323, A:P.329, A:I.331, A:V.344, A:L.425, A:F.429, A:L.432

2 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.5: 4 residues within 4Å: Chain A: L.217, T.218, G.219, D.220 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.220 PGE.6: 5 residues within 4Å: Chain A: L.23, T.27, M.194, F.463, L.468 No protein-ligand interaction detected (PLIP)

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.7: 3 residues within 4Å: Chain A: Y.99, R.158, P.160 Ligand excluded by PLIP

1 x 0RP: ethyl (2R,4S)-4-{[3,5-bis(trifluoromethyl)benzyl](methoxycarbonyl)amino}-2-ethyl-6-(trifluoromethyl)-3,4-dihydroquinoline-1(2H )-carboxylate(Non-covalent)

0RP.8: 22 residues within 4Å: Chain A: I.11, C.13, I.15, L.129, V.136, A.195, V.198, Q.199, A.202, I.205, L.206, I.215, L.217, P.221, L.228, E.229, S.230, H.232, L.261, F.263, F.441 Ligands: 2OB.2 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:I.15, A:V.136, A:I.205, A:L.261, A:F.263, A:F.263, A:F.441 Halogen bonds: A:A.195

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, S. et al., Crystal structures of cholesteryl ester transfer protein in complex with inhibitors. J.Biol.Chem. (2012)

Release Date

2012-09-05

Peptides

CETP: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CETP

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