SMTL ID : 4ezx.4 (3 other biounits)

Crystal structure of the substrate binding domain of E.coli DnaK in complex with the designer peptide NRLMLTG

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x ASN- ARG- LEU- MET- LEU- THR- GLY: synthetic peptide NRLMLTG(Non-covalent)

ASN-ARG-LEU-MET-LEU-THR-GLY.1: 19 residues within 4Å: Chain A: I.13, E.14, T.15, M.16, T.21, Q.36, V.37, F.38, S.39, T.40, A.41, Q.45, A.47, V.48, T.49, I.50, G.80, Q.83, H.153 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:I.13, A:T.21, A:F.38, A:F.38, A:A.41, A:V.48, A:I.50 Hydrogen bonds: A:M.16, A:S.39, A:S.39, A:A.41, A:Q.45, A:T.49, A:Q.83, A:Q.83 Water bridges: A:Q.45, A:Q.83

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zahn, M. et al., Structural Studies on the Forward and Reverse Binding Modes of Peptides to the Chaperone DnaK. J.Mol.Biol. (2013)

Release Date

2013-04-17

Peptides

Chaperone protein DnaK: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Chaperone protein DnaK

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