SMTL ID : 4f0h.1

UNACTIVATED RUBISCO with OXYGEN BOUND

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.96 Å

Oligo State

hetero-8-8-mer

Ligands

8 x OXY: OXYGEN MOLECULE(Non-covalent)

OXY.1: 6 residues within 4Å: Chain A: T.182, K.210, H.302, H.335, S.387, Q.409 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.182, A:S.387 OXY.4: 6 residues within 4Å: Chain C: T.182, K.210, H.302, H.335, S.387, Q.409 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:T.182, C:S.387 OXY.7: 6 residues within 4Å: Chain E: T.182, K.210, H.302, H.335, S.387, Q.409 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:T.182, E:S.387 OXY.10: 6 residues within 4Å: Chain G: T.182, K.210, H.302, H.335, S.387, Q.409 2 PLIP interactions: 2 interactions with chain G Hydrogen bonds: G:T.182, G:S.387 OXY.13: 6 residues within 4Å: Chain I: T.182, K.210, H.302, H.335, S.387, Q.409 2 PLIP interactions: 2 interactions with chain I Hydrogen bonds: I:S.387 Water bridges: I:T.182 OXY.16: 6 residues within 4Å: Chain K: T.182, K.210, H.302, H.335, S.387, Q.409 2 PLIP interactions: 2 interactions with chain K Hydrogen bonds: K:S.387 Water bridges: K:T.182 OXY.19: 6 residues within 4Å: Chain M: T.182, K.210, H.302, H.335, S.387, Q.409 2 PLIP interactions: 2 interactions with chain M Hydrogen bonds: M:S.387 Water bridges: M:T.182 OXY.22: 6 residues within 4Å: Chain O: T.182, K.210, H.302, H.335, S.387, Q.409 2 PLIP interactions: 2 interactions with chain O Hydrogen bonds: O:S.387 Water bridges: O:T.182

16 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 8 residues within 4Å: Chain A: R.303, A.304, G.305, N.306, S.307 Chain K: G.131, N.132, G.135 Ligand excluded by PLIP PO4.3: 7 residues within 4Å: Chain A: K.184, G.388, G.389, F.410, G.411, G.412 Chain K: W.75 Ligand excluded by PLIP PO4.5: 8 residues within 4Å: Chain C: R.303, A.304, G.305, N.306, S.307 Chain I: G.131, N.132, G.135 Ligand excluded by PLIP PO4.6: 7 residues within 4Å: Chain C: K.184, G.388, G.389, F.410, G.411, G.412 Chain I: W.75 Ligand excluded by PLIP PO4.8: 8 residues within 4Å: Chain E: R.303, A.304, G.305, N.306, S.307 Chain M: G.131, N.132, G.135 Ligand excluded by PLIP PO4.9: 7 residues within 4Å: Chain E: K.184, G.388, G.389, F.410, G.411, G.412 Chain M: W.75 Ligand excluded by PLIP PO4.11: 8 residues within 4Å: Chain G: R.303, A.304, G.305, N.306, S.307 Chain O: G.131, N.132, G.135 Ligand excluded by PLIP PO4.12: 7 residues within 4Å: Chain G: K.184, G.388, G.389, F.410, G.411, G.412 Chain O: W.75 Ligand excluded by PLIP PO4.14: 8 residues within 4Å: Chain C: G.131, N.132, G.135 Chain I: R.303, A.304, G.305, N.306, S.307 Ligand excluded by PLIP PO4.15: 7 residues within 4Å: Chain C: W.75 Chain I: K.184, G.388, G.389, F.410, G.411, G.412 Ligand excluded by PLIP PO4.17: 8 residues within 4Å: Chain A: G.131, N.132, G.135 Chain K: R.303, A.304, G.305, N.306, S.307 Ligand excluded by PLIP PO4.18: 7 residues within 4Å: Chain A: W.75 Chain K: K.184, G.388, G.389, F.410, G.411, G.412 Ligand excluded by PLIP PO4.20: 8 residues within 4Å: Chain E: G.131, N.132, G.135 Chain M: R.303, A.304, G.305, N.306, S.307 Ligand excluded by PLIP PO4.21: 7 residues within 4Å: Chain E: W.75 Chain M: K.184, G.388, G.389, F.410, G.411, G.412 Ligand excluded by PLIP PO4.23: 8 residues within 4Å: Chain G: G.131, N.132, G.135 Chain O: R.303, A.304, G.305, N.306, S.307 Ligand excluded by PLIP PO4.24: 7 residues within 4Å: Chain G: W.75 Chain O: K.184, G.388, G.389, F.410, G.411, G.412 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stec, B., Structural mechanism of RuBisCO activation by carbamylation of the active site lysine. Proc.Natl.Acad.Sci.USA (2012)

Release Date

2012-11-14

Peptides

Ribulose bisphosphate carboxylase large chain: ACEGIKMO
Ribulose bisphosphate carboxylase small chain: BDFHJLNP

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

E
A

G
A

I
A

K
A

M
A

O
A

B
B

D
B

F
B

H
B

J
B

L
B

N
B

P
B

Ribulose bisphosphate carboxylase large chain

Ribulose bisphosphate carboxylase small chain

Related Entries With Identical Sequence