SMTL ID : 4f2g.2 (2 other biounits)

The Crystal Structure of Ornithine carbamoyltransferase from Burkholderia thailandensis E264

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-hexamer

Ligands

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: R.7, H.8, D.14, F.15 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.7, A:R.7, A:H.8 EDO.9: 4 residues within 4Å: Chain B: R.7, H.8, D.14, F.15 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.7, B:R.7, B:H.8 EDO.17: 4 residues within 4Å: Chain C: R.7, H.8, D.14, F.15 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:R.7, C:R.7, C:H.8 EDO.25: 4 residues within 4Å: Chain D: R.7, H.8, D.14, F.15 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:R.7, D:R.7, D:H.8 EDO.33: 4 residues within 4Å: Chain E: R.7, H.8, D.14, F.15 3 PLIP interactions: 3 interactions with chain E Hydrogen bonds: E:R.7, E:R.7, E:H.8 EDO.41: 4 residues within 4Å: Chain F: R.7, H.8, D.14, F.15 3 PLIP interactions: 3 interactions with chain F Hydrogen bonds: F:R.7, F:R.7, F:H.8

42 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 8 residues within 4Å: Chain A: S.56, R.58, T.59, R.107, H.134, C.263, L.264, R.291 Ligand excluded by PLIP PO4.3: 8 residues within 4Å: Chain A: R.60, F.76 Chain B: R.60, F.76 Chain C: R.60, F.76 Ligands: PO4.11, PO4.19 Ligand excluded by PLIP PO4.4: 5 residues within 4Å: Chain A: H.73 Chain B: H.73 Chain C: H.73 Ligands: PO4.12, PO4.20 Ligand excluded by PLIP PO4.5: 6 residues within 4Å: Chain A: G.85, R.86, G.87, E.88, P.89 Ligands: PO4.6 Ligand excluded by PLIP PO4.6: 6 residues within 4Å: Chain A: G.85, R.86, E.88, P.89, V.90 Ligands: PO4.5 Ligand excluded by PLIP PO4.7: 4 residues within 4Å: Chain A: H.148, R.149, L.259, V.283 Ligand excluded by PLIP PO4.8: 6 residues within 4Å: Chain A: K.33, E.38 Chain D: R.26, I.29, K.33 Ligands: PO4.32 Ligand excluded by PLIP PO4.10: 8 residues within 4Å: Chain B: S.56, R.58, T.59, R.107, H.134, C.263, L.264, R.291 Ligand excluded by PLIP PO4.11: 8 residues within 4Å: Chain A: R.60, F.76 Chain B: R.60, F.76 Chain C: R.60, F.76 Ligands: PO4.3, PO4.19 Ligand excluded by PLIP PO4.12: 5 residues within 4Å: Chain A: H.73 Chain B: H.73 Chain C: H.73 Ligands: PO4.4, PO4.20 Ligand excluded by PLIP PO4.13: 6 residues within 4Å: Chain B: G.85, R.86, G.87, E.88, P.89 Ligands: PO4.14 Ligand excluded by PLIP PO4.14: 6 residues within 4Å: Chain B: G.85, R.86, E.88, P.89, V.90 Ligands: PO4.13 Ligand excluded by PLIP PO4.15: 4 residues within 4Å: Chain B: H.148, R.149, L.259, V.283 Ligand excluded by PLIP PO4.16: 6 residues within 4Å: Chain B: K.33, E.38 Chain F: R.26, I.29, K.33 Ligands: PO4.48 Ligand excluded by PLIP PO4.18: 8 residues within 4Å: Chain C: S.56, R.58, T.59, R.107, H.134, C.263, L.264, R.291 Ligand excluded by PLIP PO4.19: 8 residues within 4Å: Chain A: R.60, F.76 Chain B: R.60, F.76 Chain C: R.60, F.76 Ligands: PO4.3, PO4.11 Ligand excluded by PLIP PO4.20: 5 residues within 4Å: Chain A: H.73 Chain B: H.73 Chain C: H.73 Ligands: PO4.4, PO4.12 Ligand excluded by PLIP PO4.21: 6 residues within 4Å: Chain C: G.85, R.86, G.87, E.88, P.89 Ligands: PO4.22 Ligand excluded by PLIP PO4.22: 6 residues within 4Å: Chain C: G.85, R.86, E.88, P.89, V.90 Ligands: PO4.21 Ligand excluded by PLIP PO4.23: 4 residues within 4Å: Chain C: H.148, R.149, L.259, V.283 Ligand excluded by PLIP PO4.24: 6 residues within 4Å: Chain C: K.33, E.38 Chain E: R.26, I.29, K.33 Ligands: PO4.40 Ligand excluded by PLIP PO4.26: 8 residues within 4Å: Chain D: S.56, R.58, T.59, R.107, H.134, C.263, L.264, R.291 Ligand excluded by PLIP PO4.27: 8 residues within 4Å: Chain D: R.60, F.76 Chain E: R.60, F.76 Chain F: R.60, F.76 Ligands: PO4.35, PO4.43 Ligand excluded by PLIP PO4.28: 5 residues within 4Å: Chain D: H.73 Chain E: H.73 Chain F: H.73 Ligands: PO4.36, PO4.44 Ligand excluded by PLIP PO4.29: 6 residues within 4Å: Chain D: G.85, R.86, G.87, E.88, P.89 Ligands: PO4.30 Ligand excluded by PLIP PO4.30: 6 residues within 4Å: Chain D: G.85, R.86, E.88, P.89, V.90 Ligands: PO4.29 Ligand excluded by PLIP PO4.31: 4 residues within 4Å: Chain D: H.148, R.149, L.259, V.283 Ligand excluded by PLIP PO4.32: 6 residues within 4Å: Chain A: R.26, I.29, K.33 Chain D: K.33, E.38 Ligands: PO4.8 Ligand excluded by PLIP PO4.34: 8 residues within 4Å: Chain E: S.56, R.58, T.59, R.107, H.134, C.263, L.264, R.291 Ligand excluded by PLIP PO4.35: 8 residues within 4Å: Chain D: R.60, F.76 Chain E: R.60, F.76 Chain F: R.60, F.76 Ligands: PO4.27, PO4.43 Ligand excluded by PLIP PO4.36: 5 residues within 4Å: Chain D: H.73 Chain E: H.73 Chain F: H.73 Ligands: PO4.28, PO4.44 Ligand excluded by PLIP PO4.37: 6 residues within 4Å: Chain E: G.85, R.86, G.87, E.88, P.89 Ligands: PO4.38 Ligand excluded by PLIP PO4.38: 6 residues within 4Å: Chain E: G.85, R.86, E.88, P.89, V.90 Ligands: PO4.37 Ligand excluded by PLIP PO4.39: 4 residues within 4Å: Chain E: H.148, R.149, L.259, V.283 Ligand excluded by PLIP PO4.40: 6 residues within 4Å: Chain C: R.26, I.29, K.33 Chain E: K.33, E.38 Ligands: PO4.24 Ligand excluded by PLIP PO4.42: 8 residues within 4Å: Chain F: S.56, R.58, T.59, R.107, H.134, C.263, L.264, R.291 Ligand excluded by PLIP PO4.43: 8 residues within 4Å: Chain D: R.60, F.76 Chain E: R.60, F.76 Chain F: R.60, F.76 Ligands: PO4.27, PO4.35 Ligand excluded by PLIP PO4.44: 5 residues within 4Å: Chain D: H.73 Chain E: H.73 Chain F: H.73 Ligands: PO4.28, PO4.36 Ligand excluded by PLIP PO4.45: 6 residues within 4Å: Chain F: G.85, R.86, G.87, E.88, P.89 Ligands: PO4.46 Ligand excluded by PLIP PO4.46: 6 residues within 4Å: Chain F: G.85, R.86, E.88, P.89, V.90 Ligands: PO4.45 Ligand excluded by PLIP PO4.47: 4 residues within 4Å: Chain F: H.148, R.149, L.259, V.283 Ligand excluded by PLIP PO4.48: 6 residues within 4Å: Chain B: R.26, I.29, K.33 Chain F: K.33, E.38 Ligands: PO4.16 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Baugh, L. et al., Combining functional and structural genomics to sample the essential Burkholderia structome. Plos One (2013)

Release Date

2012-05-30

Peptides

Ornithine carbamoyltransferase 1: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

Ornithine carbamoyltransferase 1

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