SMTL ID : 4f40.1 (1 other biounit)

X-ray crystal structure of Apo prostaglandin f synthase from Leishmania major Friedlin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x CIT: CITRIC ACID(Non-functional Binders)

CIT.1: 4 residues within 4Å: Chain A: G.18, K.20 Ligands: EDO.3, EDO.5 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:K.20 Water bridges: A:G.18, A:K.20, A:K.20, A:R.148 Salt bridges: A:K.20, A:K.20, A:K.20, A:R.148

9 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 6 residues within 4Å: Chain A: M.12, P.22, E.76, D.77, V.78, F.79 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.76 Water bridges: A:R.148, A:R.148 EDO.3: 3 residues within 4Å: Chain A: G.18, K.20 Ligands: CIT.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.18, A:K.20 EDO.4: 4 residues within 4Å: Chain A: C.167, T.168, V.169, T.170 No protein-ligand interaction detected (PLIP) EDO.5: 5 residues within 4Å: Chain A: N.17, G.18, V.19, R.148 Ligands: CIT.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.148 Water bridges: A:K.20 EDO.6: 3 residues within 4Å: Chain A: H.158, E.161, D.162 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.161 Water bridges: A:H.158 EDO.7: 4 residues within 4Å: Chain A: A.56, I.57, W.85, E.88 1 PLIP interactions: 1 interactions with chain A Water bridges: A:A.56 EDO.8: 6 residues within 4Å: Chain A: W.29, Y.58, H.116, W.117, N.154, W.201 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.58, A:Y.58, A:W.117, A:S.153, A:N.154 EDO.9: 3 residues within 4Å: Chain A: Y.142, K.143, K.145 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.142, A:K.145 EDO.10: 7 residues within 4Å: Chain A: S.202, P.203, L.204, G.205, I.242, P.243, K.244 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.204, A:G.205, A:I.242, A:K.244

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.11: 2 residues within 4Å: Chain A: A.264, E.265 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Moen, S.O. et al., Structures of prostaglandin F synthase from the protozoa Leishmania major and Trypanosoma cruzi with NADP. Acta Crystallogr F Struct Biol Commun (2015)

Release Date

2012-06-13

Peptides

Prostaglandin f2-alpha synthase/D-arabinose dehydrogenase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Prostaglandin f2-alpha synthase/D-arabinose dehydrogenase

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