SMTL ID : 4f40.2 (1 other biounit)

X-ray crystal structure of Apo prostaglandin f synthase from Leishmania major Friedlin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x CIT: CITRIC ACID(Non-functional Binders)

CIT.1: 4 residues within 4Å: Chain A: G.18, K.20 Ligands: EDO.2, EDO.4 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:G.18, A:K.20 Water bridges: A:G.18, A:K.20, A:K.20, A:R.148, A:R.148 Salt bridges: A:K.20, A:K.20, A:K.20, A:R.148

9 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 3 residues within 4Å: Chain A: G.18, K.20 Ligands: CIT.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.20 EDO.3: 5 residues within 4Å: Chain A: P.22, E.76, D.77, V.78, F.79 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.76 Water bridges: A:R.148, A:R.148 EDO.4: 3 residues within 4Å: Chain A: N.17, G.18 Ligands: CIT.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.17 EDO.5: 2 residues within 4Å: Chain A: Y.142, K.143 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.142 EDO.6: 4 residues within 4Å: Chain A: K.244, S.245, V.246, H.247 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.244, A:K.244, A:V.246, A:H.247, A:H.247 EDO.7: 6 residues within 4Å: Chain A: W.29, Y.58, H.116, W.117, N.154, W.201 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.58, A:S.153, A:N.154, A:N.154 EDO.8: 3 residues within 4Å: Chain A: T.275, N.276, S.277 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.275, A:T.275 Water bridges: A:S.277, A:S.277, A:R.278 EDO.9: 3 residues within 4Å: Chain A: R.232, I.235, F.258 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.232, A:R.232 EDO.10: 4 residues within 4Å: Chain A: A.56, I.57, W.85, E.88 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.59, A:K.59, A:E.100 Water bridges: A:T.87, A:E.100

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Moen, S.O. et al., Structures of prostaglandin F synthase from the protozoa Leishmania major and Trypanosoma cruzi with NADP. Acta Crystallogr F Struct Biol Commun (2015)

Release Date

2012-06-13

Peptides

Prostaglandin f2-alpha synthase/D-arabinose dehydrogenase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Prostaglandin f2-alpha synthase/D-arabinose dehydrogenase

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