SMTL ID : 4f49.4 (3 other biounits)

2.25A resolution structure of Transmissible Gastroenteritis Virus Protease containing a covalently bound Dipeptidyl Inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

monomer

Ligands

1 x K36: (1S,2S)-2-({N-[(benzyloxy)carbonyl]-L-leucyl}amino)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid(Covalent)

K36.1: 15 residues within 4Å: Chain A: H.48, F.146, I.147, A.148, G.149, T.150, C.151, H.169, H.170, L.171, E.172, H.178, D.193, Q.194, P.195 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.171, A:E.172, A:P.195 Hydrogen bonds: A:G.149, A:T.150, A:C.151, A:H.170, A:E.172

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.2: 4 residues within 4Å: Chain A: W.239, V.273, R.274, K.277 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.277

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, Y. et al., Broad-Spectrum Antivirals against 3C or 3C-Like Proteases of Picornaviruses, Noroviruses, and Coronaviruses. J.Virol. (2012)

Release Date

2012-09-05

Peptides

3C-like proteinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

3C-like proteinase

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