SMTL ID : 4f5x.1 (1 other biounit)

Location of the dsRNA-dependent polymerase, VP1, in rotavirus particles

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 5.00 Å

Oligo State

hetero-2-13-1-mer

Ligands

5 x ZN: ZINC ION(Non-covalent)(Non-functional Binders)

ZN.1: 4 residues within 4Å: Chain C: H.153 Chain D: H.153, K.154 Chain E: H.153 3 PLIP interactions: 1 interactions with chain D, 1 interactions with chain C, 1 interactions with chain E Metal complexes: D:H.153, C:H.153, E:H.153 ZN.2: 5 residues within 4Å: Chain F: H.153 Chain G: H.153, K.154 Chain H: H.153, K.154 3 PLIP interactions: 1 interactions with chain H, 1 interactions with chain F, 1 interactions with chain G Metal complexes: H:H.153, F:H.153, G:H.153 ZN.3: 6 residues within 4Å: Chain I: H.153, K.154 Chain J: H.153, K.154 Chain K: H.153, K.154 3 PLIP interactions: 1 interactions with chain K, 1 interactions with chain I, 1 interactions with chain J Metal complexes: K:H.153, I:H.153, J:H.153 ZN.4: 6 residues within 4Å: Chain L: H.153, K.154 Chain M: H.153, K.154 Chain N: H.153, K.154 3 PLIP interactions: 1 interactions with chain L, 1 interactions with chain N, 1 interactions with chain M Metal complexes: L:H.153, N:H.153, M:H.153 ZN.5: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Estrozi, L.F. et al., Location of the dsRNA-Dependent Polymerase, VP1, in Rotavirus Particles. J.Mol.Biol. (2013)

Release Date

2012-10-24

Peptides

VP2 protein: AB
Intermediate capsid protein VP6: CDEFGHIJKLMNO
RNA-directed RNA polymerase: P

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

M
M

N
N

O
O

P
W

VP2 protein

Intermediate capsid protein VP6

RNA-directed RNA polymerase

Related Entries With Identical Sequence