- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.99 Å
- Oligo State
- homo-pentamer
- Ligands
- 5 x RKE: (R)-ketamine(Non-covalent)
- 6 x LMD: tetradecyl 4-O-alpha-D-glucopyranosyl-beta-D-glucopyranoside(Non-covalent)
LMD.2: 16 residues within 4Å:- Chain A: D.31, K.33, I.233, A.237, I.240, L.241, T.244, N.245
- Chain B: K.33, T.244
- Chain E: I.233, A.234, A.237
- Ligands: LMD.6, LMD.13, LMD.19
10 PLIP interactions:6 interactions with chain A, 3 interactions with chain E, 1 interactions with chain B- Hydrophobic interactions: A:I.240, A:L.241, E:I.233, E:A.234, E:A.237
- Hydrogen bonds: A:D.31, A:T.244, A:T.244, A:T.244
- Salt bridges: B:K.33
LMD.6: 16 residues within 4Å:- Chain A: I.233, A.234, A.237
- Chain B: D.31, K.33, I.233, A.237, I.240, L.241, T.244, N.245
- Chain C: K.33, T.244
- Ligands: LMD.2, LMD.10, LMD.13
10 PLIP interactions:8 interactions with chain B, 1 interactions with chain A, 1 interactions with chain C- Hydrophobic interactions: B:I.233, B:A.237, B:L.241, A:A.237
- Hydrogen bonds: B:T.244, B:T.244, B:T.244, B:N.245
- Water bridges: B:D.32
- Salt bridges: C:K.33
LMD.10: 15 residues within 4Å:- Chain B: I.233, A.234, A.237
- Chain C: D.31, I.233, I.236, A.237, I.240, T.244, N.245
- Chain D: K.33, T.244
- Ligands: LMD.6, LMD.13, LMD.15
8 PLIP interactions:1 interactions with chain D, 5 interactions with chain C, 2 interactions with chain B- Salt bridges: D:K.33
- Hydrophobic interactions: C:I.236, C:A.237, B:I.233, B:A.237
- Hydrogen bonds: C:T.244, C:T.244, C:N.245
LMD.13: 14 residues within 4Å:- Chain A: I.233
- Chain B: S.230, I.233
- Chain C: S.230, I.233
- Chain D: S.230, I.233
- Chain E: S.230, I.233
- Ligands: LMD.2, LMD.6, LMD.10, LMD.15, LMD.19
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:S.230, B:S.230
LMD.15: 15 residues within 4Å:- Chain C: A.234, A.237
- Chain D: D.31, I.233, I.236, A.237, I.240, L.241, T.244, N.245
- Chain E: K.33, T.244
- Ligands: LMD.10, LMD.13, LMD.19
12 PLIP interactions:9 interactions with chain D, 1 interactions with chain E, 2 interactions with chain C- Hydrophobic interactions: D:I.233, D:I.236, D:A.237, D:I.240, D:I.240, D:L.241, C:A.234, C:A.237
- Hydrogen bonds: D:D.31, D:T.244, D:T.244
- Salt bridges: E:K.33
LMD.19: 15 residues within 4Å:- Chain A: K.33, T.244
- Chain D: I.233, A.237
- Chain E: D.31, I.233, I.236, A.237, I.240, L.241, T.244, N.245
- Ligands: LMD.2, LMD.13, LMD.15
12 PLIP interactions:8 interactions with chain E, 3 interactions with chain A, 1 interactions with chain D- Hydrophobic interactions: E:I.233, E:I.236, E:A.237, E:L.241, A:T.244, D:A.237
- Hydrogen bonds: E:D.31, E:T.244, E:T.244, E:T.244, A:T.244
- Salt bridges: A:K.33
- 10 x PC1: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE(Non-covalent)
PC1.3: 9 residues within 4Å:- Chain A: R.118, F.121, Y.194, I.198, L.203, Y.254, I.258, N.307, F.315
9 PLIP interactions:9 interactions with chain A- Hydrophobic interactions: A:F.121, A:F.121, A:F.121, A:Y.194, A:I.198, A:L.203, A:Y.254, A:I.258
- Hydrogen bonds: A:R.118
PC1.4: 9 residues within 4Å:- Chain A: R.117, R.118, Y.251, M.252, A.257, F.260, M.261, L.313, F.314
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:Y.251, A:M.252, A:A.257, A:F.260
- Salt bridges: A:R.117
PC1.7: 10 residues within 4Å:- Chain B: R.118, F.121, Y.194, I.198, I.202, L.203, Y.254, N.307, F.315
- Ligands: PC1.8
7 PLIP interactions:7 interactions with chain B- Hydrophobic interactions: B:F.121, B:F.121, B:Y.194, B:Y.194, B:I.202, B:L.203
- Hydrogen bonds: B:R.118
PC1.8: 4 residues within 4Å:- Chain B: R.118, L.313, F.314
- Ligands: PC1.7
1 PLIP interactions:1 interactions with chain B- Hydrophobic interactions: B:F.314
PC1.11: 10 residues within 4Å:- Chain C: R.118, F.121, Y.194, I.198, I.202, L.206, Y.254, I.258, N.307, F.315
9 PLIP interactions:9 interactions with chain C- Hydrophobic interactions: C:F.121, C:Y.194, C:Y.194, C:I.198, C:I.202, C:L.206, C:Y.254, C:I.258
- Hydrogen bonds: C:R.118
PC1.12: 7 residues within 4Å:- Chain B: F.195
- Chain C: Y.251, M.252, M.261, L.264, L.313, F.314
4 PLIP interactions:1 interactions with chain B, 3 interactions with chain C- Hydrophobic interactions: B:F.195, C:M.261, C:L.264
- Hydrogen bonds: C:M.252
PC1.16: 8 residues within 4Å:- Chain D: R.118, F.121, Y.194, I.198, L.203, Y.254, N.307, F.315
5 PLIP interactions:5 interactions with chain D- Hydrophobic interactions: D:Y.194, D:Y.194, D:L.203, D:Y.254
- Salt bridges: D:R.118
PC1.17: 7 residues within 4Å:- Chain C: F.195
- Chain D: R.118, M.252, A.257, F.260, L.313, F.314
4 PLIP interactions:4 interactions with chain D- Hydrophobic interactions: D:M.252, D:A.257, D:F.260
- Hydrogen bonds: D:L.313
PC1.20: 9 residues within 4Å:- Chain E: F.121, S.123, E.163, S.191, Y.194, I.198, Y.254, N.307, F.315
9 PLIP interactions:9 interactions with chain E- Hydrophobic interactions: E:F.121, E:F.121, E:F.121, E:Y.194, E:Y.194, E:I.198, E:Y.254
- Hydrogen bonds: E:S.123
- Salt bridges: E:E.163
PC1.21: 9 residues within 4Å:- Chain D: I.198
- Chain E: R.118, Y.251, M.252, A.257, F.260, M.261, L.313, F.314
8 PLIP interactions:7 interactions with chain E, 1 interactions with chain D- Hydrophobic interactions: E:M.252, E:A.257, E:F.260, E:F.260, E:F.314, D:I.198
- Hydrogen bonds: E:M.252, E:L.313
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Pan, J. et al., Structure of the Pentameric Ligand-Gated Ion Channel GLIC Bound with Anesthetic Ketamine. Structure (2012)
- Release Date
- 2012-08-29
- Peptides
- Proton-gated ion channel: ABCDE
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
E - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.99 Å
- Oligo State
- homo-pentamer
- Ligands
- 5 x RKE: (R)-ketamine(Non-covalent)
- 6 x LMD: tetradecyl 4-O-alpha-D-glucopyranosyl-beta-D-glucopyranoside(Non-covalent)
- 10 x PC1: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Pan, J. et al., Structure of the Pentameric Ligand-Gated Ion Channel GLIC Bound with Anesthetic Ketamine. Structure (2012)
- Release Date
- 2012-08-29
- Peptides
- Proton-gated ion channel: ABCDE
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
E - Membrane
-
We predict this structure to be a membrane protein.