- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.10 Å
- Oligo State
- homo-pentamer
- Ligands
- 10 x ACT: ACETATE ION(Non-functional Binders)
- 10 x PLC: DIUNDECYL PHOSPHATIDYL CHOLINE(Non-covalent)(Non-functional Binders)
PLC.2: 10 residues within 4Å:- Chain A: R.118, F.121, Y.194, I.202, L.206, Y.254, I.258, N.307, F.315
- Ligands: PLC.3
9 PLIP interactions:9 interactions with chain A- Hydrophobic interactions: A:F.121, A:F.121, A:F.121, A:Y.194, A:I.202, A:L.206, A:Y.254, A:I.258
- Hydrogen bonds: A:R.118
PLC.3: 1 residues within 4Å:- Ligands: PLC.2
No protein-ligand interaction detected (PLIP)PLC.16: 10 residues within 4Å:- Chain B: R.118, F.121, Y.194, I.202, L.206, Y.254, I.258, N.307, F.315
- Ligands: PLC.17
8 PLIP interactions:8 interactions with chain B- Hydrophobic interactions: B:F.121, B:F.121, B:F.121, B:Y.194, B:I.202, B:L.206, B:Y.254, B:I.258
PLC.17: 1 residues within 4Å:- Ligands: PLC.16
No protein-ligand interaction detected (PLIP)PLC.29: 10 residues within 4Å:- Chain C: R.118, F.121, Y.194, I.202, L.206, Y.254, I.258, N.307, F.315
- Ligands: PLC.30
8 PLIP interactions:8 interactions with chain C- Hydrophobic interactions: C:F.121, C:F.121, C:F.121, C:I.202, C:L.206, C:Y.254, C:I.258
- Hydrogen bonds: C:R.118
PLC.30: 1 residues within 4Å:- Ligands: PLC.29
No protein-ligand interaction detected (PLIP)PLC.43: 9 residues within 4Å:- Chain D: R.118, F.121, Y.194, L.206, Y.254, I.258, N.307, F.315
- Ligands: PLC.44
8 PLIP interactions:8 interactions with chain D- Hydrophobic interactions: D:F.121, D:F.121, D:F.121, D:Y.194, D:L.206, D:Y.254, D:I.258
- Hydrogen bonds: D:R.118
PLC.44: 1 residues within 4Å:- Ligands: PLC.43
No protein-ligand interaction detected (PLIP)PLC.56: 10 residues within 4Å:- Chain E: R.118, F.121, Y.194, I.202, L.206, Y.254, I.258, N.307, F.315
- Ligands: PLC.57
8 PLIP interactions:8 interactions with chain E- Hydrophobic interactions: E:F.121, E:F.121, E:F.121, E:I.202, E:L.206, E:Y.254, E:I.258
- Hydrogen bonds: E:R.118
PLC.57: 1 residues within 4Å:- Ligands: PLC.56
No protein-ligand interaction detected (PLIP)- 5 x CL: CHLORIDE ION(Non-functional Binders)
CL.4: 4 residues within 4Å:- Chain A: R.77, F.78, V.81, R.85
Ligand excluded by PLIPCL.18: 4 residues within 4Å:- Chain B: R.77, F.78, V.81, R.85
Ligand excluded by PLIPCL.31: 3 residues within 4Å:- Chain C: F.78, V.81, R.85
Ligand excluded by PLIPCL.45: 4 residues within 4Å:- Chain D: R.77, F.78, V.81, R.85
Ligand excluded by PLIPCL.58: 4 residues within 4Å:- Chain E: R.77, F.78, V.81, R.85
Ligand excluded by PLIP- 6 x NA: SODIUM ION(Non-functional Binders)
NA.5: 5 residues within 4Å:- Chain A: V.5, P.68, I.71, W.72, I.73
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:P.68, A:I.73
NA.19: 4 residues within 4Å:- Chain B: P.68, I.71, W.72, I.73
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:I.71, B:I.73
NA.32: 4 residues within 4Å:- Chain C: V.5, P.68, E.69, I.71
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:P.68
NA.33: 1 residues within 4Å:- Chain C: T.226
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:T.226, C:T.226
NA.46: 4 residues within 4Å:- Chain D: V.5, P.68, I.71, I.73
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:P.68, D:I.73
NA.59: 3 residues within 4Å:- Chain E: P.68, E.69, I.71
1 PLIP interactions:1 interactions with chain E- Hydrogen bonds: E:E.69
- 6 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-functional Binders)(Non-covalent)
LMT.7: 5 residues within 4Å:- Ligands: LMT.8, LMT.21, LMT.35, LMT.48, LMT.61
No protein-ligand interaction detected (PLIP)LMT.8: 5 residues within 4Å:- Chain A: A.237, I.240
- Chain E: A.237
- Ligands: LMT.7, LMT.21
4 PLIP interactions:3 interactions with chain A, 1 interactions with chain E- Hydrophobic interactions: A:A.237, A:I.240, A:I.240, E:A.237
LMT.21: 6 residues within 4Å:- Chain A: A.237
- Chain B: A.237, I.240, L.241
- Ligands: LMT.7, LMT.8
5 PLIP interactions:4 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:A.237, B:I.240, B:I.240, B:L.241, A:A.237
LMT.35: 5 residues within 4Å:- Chain B: A.237
- Chain C: A.237, I.240
- Ligands: LMT.7, LMT.48
4 PLIP interactions:3 interactions with chain C, 1 interactions with chain B- Hydrophobic interactions: C:A.237, C:I.240, C:I.240, B:A.237
LMT.48: 7 residues within 4Å:- Chain C: A.237
- Chain D: A.237, I.240, L.241, T.244
- Ligands: LMT.7, LMT.35
3 PLIP interactions:2 interactions with chain D, 1 interactions with chain C- Hydrophobic interactions: D:A.237, D:I.240, C:A.237
LMT.61: 5 residues within 4Å:- Chain D: A.237
- Chain E: I.233, A.237, I.240
- Ligands: LMT.7
4 PLIP interactions:3 interactions with chain E, 1 interactions with chain D- Hydrophobic interactions: E:I.233, E:A.237, E:I.240, D:A.237
- 30 x XE: XENON(Non-covalent)(Non-functional Binders)
XE.9: 4 residues within 4Å:- Chain A: V.229, L.232, I.233
- Chain E: T.231
Ligand excluded by PLIPXE.10: 4 residues within 4Å:- Chain A: P.120, Y.197, I.201, T.255
Ligand excluded by PLIPXE.11: 4 residues within 4Å:- Chain A: I.202, Y.254, T.255, I.258
Ligand excluded by PLIPXE.12: 2 residues within 4Å:- Chain A: V.270, V.273
Ligand excluded by PLIPXE.13: 4 residues within 4Å:- Chain A: F.37, I.128, F.165, L.188
Ligand excluded by PLIPXE.14: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPXE.22: 3 residues within 4Å:- Chain B: V.229, L.232, I.233
Ligand excluded by PLIPXE.23: 4 residues within 4Å:- Chain B: P.120, Y.197, I.201, T.255
Ligand excluded by PLIPXE.24: 4 residues within 4Å:- Chain B: I.202, Y.254, T.255, I.258
Ligand excluded by PLIPXE.25: 2 residues within 4Å:- Chain B: V.270, V.273
Ligand excluded by PLIPXE.26: 5 residues within 4Å:- Chain B: F.37, I.128, F.165, Y.186, L.188
Ligand excluded by PLIPXE.27: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPXE.36: 4 residues within 4Å:- Chain B: T.231
- Chain C: V.229, L.232, I.233
Ligand excluded by PLIPXE.37: 3 residues within 4Å:- Chain C: Y.197, I.201, T.255
Ligand excluded by PLIPXE.38: 4 residues within 4Å:- Chain C: I.202, Y.254, T.255, I.258
Ligand excluded by PLIPXE.39: 2 residues within 4Å:- Chain C: V.270, V.273
Ligand excluded by PLIPXE.40: 4 residues within 4Å:- Chain C: F.37, I.128, F.165, L.188
Ligand excluded by PLIPXE.41: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPXE.49: 3 residues within 4Å:- Chain C: T.231
- Chain D: L.232, I.233
Ligand excluded by PLIPXE.50: 4 residues within 4Å:- Chain D: P.120, Y.197, I.201, T.255
Ligand excluded by PLIPXE.51: 4 residues within 4Å:- Chain D: I.202, Y.254, T.255, I.258
Ligand excluded by PLIPXE.52: 1 residues within 4Å:- Chain D: V.270
Ligand excluded by PLIPXE.53: 4 residues within 4Å:- Chain D: F.37, I.128, F.165, L.188
Ligand excluded by PLIPXE.54: 1 residues within 4Å:- Chain D: V.302
Ligand excluded by PLIPXE.62: 3 residues within 4Å:- Chain E: V.229, L.232, I.233
Ligand excluded by PLIPXE.63: 4 residues within 4Å:- Chain E: P.120, Y.197, I.201, T.255
Ligand excluded by PLIPXE.64: 5 residues within 4Å:- Chain E: F.121, I.202, Y.254, T.255, I.258
Ligand excluded by PLIPXE.65: 2 residues within 4Å:- Chain E: V.270, V.273
Ligand excluded by PLIPXE.66: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPXE.67: 5 residues within 4Å:- Chain E: L.126, I.128, F.165, Y.186, L.188
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Sauguet, L. et al., Structural Basis for Xenon Inhibition in a Cationic Pentameric Ligand-Gated Ion Channel. Plos One (2016)
- Release Date
- 2016-03-02
- Peptides
- Proton-gated ion channel: ABCDE
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
E - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.10 Å
- Oligo State
- homo-pentamer
- Ligands
- 10 x ACT: ACETATE ION(Non-functional Binders)
- 10 x PLC: DIUNDECYL PHOSPHATIDYL CHOLINE(Non-covalent)(Non-functional Binders)
- 5 x CL: CHLORIDE ION(Non-functional Binders)
- 6 x NA: SODIUM ION(Non-functional Binders)
- 6 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-functional Binders)(Non-covalent)
- 30 x XE: XENON(Non-covalent)(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Sauguet, L. et al., Structural Basis for Xenon Inhibition in a Cationic Pentameric Ligand-Gated Ion Channel. Plos One (2016)
- Release Date
- 2016-03-02
- Peptides
- Proton-gated ion channel: ABCDE
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
E - Membrane
-
We predict this structure to be a membrane protein.