SMTL ID : 4f94.1

Structure of the Class D Beta-Lactamase OXA-24 K84D in Acyl-Enzyme Complex with Oxacillin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

1 x 1S6: (2R,4S)-5,5-dimethyl-2-[(1R)-1-{[(5-methyl-3-phenyl-1,2-oxazol-4-yl)carbonyl]amino}-2-oxoethyl]-1,3-thiazolidine-4-carb oxylic acid(Covalent)

1S6.1: 15 residues within 4Å: Chain A: A.50, S.51, Y.82, W.85, S.98, V.100, L.138, V.139, S.189, G.190, W.191, G.192, M.193, R.231 Ligands: SO4.5 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.138, A:L.138, A:V.139, A:W.191, A:W.191 Hydrogen bonds: A:S.51, A:S.98, A:S.98, A:W.191, A:W.191 Salt bridges: A:K.188, A:R.231

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: G.111, L.112, E.113 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.112, A:E.113 Water bridges: A:L.114 SO4.3: 1 residues within 4Å: Chain A: Q.148 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.148 Water bridges: A:E.46 SO4.4: 4 residues within 4Å: Chain A: H.158, G.211, K.212, K.213 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.213 Salt bridges: A:H.158 SO4.5: 3 residues within 4Å: Chain A: W.191, Q.198 Ligands: 1S6.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:W.191, A:Q.198

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

June, C.M. et al., Structure of the Class D Beta-Lactamase OXA-24 K84D in Acyl-Enzyme Complex with Oxacillin. To be Published

Release Date

2013-08-14

Peptides

Beta-lactamase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-lactamase

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