SMTL ID : 7rpc.1

X-ray crystal structure of OXA-24/40 K84D in complex with ertapenem

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.58 Å

Oligo State

monomer

Ligands

1 x BCT: BICARBONATE ION(Non-functional Binders)

BCT.1: 2 residues within 4Å: Chain A: Q.148, N.151 1 PLIP interactions: 1 interactions with chain A Water bridges: A:Q.148

1 x 6H7: (1S,4R,5S,6S)-3-{[(3S,5S)-5-carbamoylpyrrolidin-3-yl]sulfanyl}-6-[(1R)-1-hydroxyethyl]-4-methyl-7-oxo-1-azabicyclo[3.2.0]hept-2-ene-2-carboxylic acid(Non-covalent)

6H7.2: 13 residues within 4Å: Chain A: S.51, Y.82, W.85, S.98, V.100, L.138, S.189, G.190, W.191, M.193, G.194, G.228, R.231 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:Y.82, A:W.85, A:V.100, A:L.138 Hydrogen bonds: A:S.51, A:S.98, A:W.191, A:M.193, A:G.194, A:R.231 Water bridges: A:G.228 Salt bridges: A:K.188, A:R.231

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 3 residues within 4Å: Chain A: G.111, L.112, E.113 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.112, A:E.113

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mitchell, J.M. et al., Conformational flexibility in carbapenem hydrolysis drives substrate specificity of the class D carbapenemase OXA-24/40. J.Biol.Chem. (2022)

Release Date

2022-07-06

Peptides

Beta-lactamase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-lactamase

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