SMTL ID : 4f9w.1

Human P38alpha MAPK in Complex with a Novel and Selective Small Molecule Inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

2 x GG5: 4-[3-(4-FLUOROPHENYL)-1H-PYRAZOL-4-YL]PYRIDINE(Non-covalent)

GG5.1: 12 residues within 4Å: Chain A: P.214, E.215, L.218, W.220, P.265, L.269, K.272, I.273, I.282, L.314, D.315, S.316 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:P.214, A:L.218, A:W.220, A:P.265, A:L.269, A:L.269, A:I.273, A:I.282, A:L.314, A:L.314 Hydrogen bonds: A:S.316, A:S.316 Water bridges: A:S.274, A:D.317 pi-Stacking: A:W.220 GG5.2: 7 residues within 4Å: Chain A: M.217, L.218, I.252, L.255, S.277, A.278, Y.281 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.218, A:I.252, A:Y.281, A:Y.281 Hydrogen bonds: A:S.277 Water bridges: A:Y.281

1 x LM4: N,N-dimethyl-6-(naphthalen-2-yl)-5-(pyridin-4-yl)pyridazin-3-amine(Non-covalent)

LM4.3: 15 residues within 4Å: Chain A: V.61, A.74, K.76, L.98, I.107, L.109, L.127, V.128, T.129, H.130, L.131, M.132, S.177, L.190, D.191 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:V.61, A:A.74, A:K.76, A:L.98, A:I.107, A:L.109, A:L.127, A:T.129, A:L.190 Hydrogen bonds: A:K.76, A:M.132

1 x ZN: ZINC ION(Non-covalent)

ZN.4: 2 residues within 4Å: Chain A: H.87 Ligands: ACT.5 3 PLIP interactions: 1 interactions with chain A, 1 Ligand-Ligand interactions, 1 Ligand-Water interactions Metal complexes: A:H.87, ACT.5, H2O.7

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.5: 2 residues within 4Å: Chain A: H.87 Ligands: ZN.4 2 PLIP interactions: 2 interactions with chain A Water bridges: A:R.90 Salt bridges: A:H.87

1 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.6: 5 residues within 4Å: Chain A: H.149, V.181, N.182, E.183, C.185 No protein-ligand interaction detected (PLIP)

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.7: 3 residues within 4Å: Chain A: Y.32, E.45, Q.48 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.45, A:Q.48, A:Q.48

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Watterson, D.M. et al., Development of Novel In Vivo Chemical Probes to Address CNS Protein Kinase Involvement in Synaptic Dysfunction. Plos One (2013)

Release Date

2013-06-05

Peptides

Mitogen-activated protein kinase 14: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mitogen-activated protein kinase 14

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