SMTL ID : 4fa8.1 (3 other biounits)

Multi-pronged modulation of cytokine signaling

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-6-6-mer

Ligands

6 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 7 residues within 4Å: Chain A: P.55, F.56, F.59, F.60, N.77, S.79, H.80 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.56 Hydrogen bonds: A:P.55 NAG-NAG-BMA.2: 7 residues within 4Å: Chain B: P.55, F.56, F.59, F.60, N.77, S.79, H.80 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:P.55, B:F.56 Hydrogen bonds: B:P.55 NAG-NAG-BMA.3: 6 residues within 4Å: Chain C: P.55, F.59, F.60, N.77, S.79, H.80 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:P.55 NAG-NAG-BMA.7: 7 residues within 4Å: Chain G: P.55, F.56, F.59, F.60, N.77, S.79, H.80 2 PLIP interactions: 2 interactions with chain G Hydrophobic interactions: G:F.56 Hydrogen bonds: G:P.55 NAG-NAG-BMA.8: 7 residues within 4Å: Chain H: P.55, F.56, F.59, F.60, N.77, S.79, H.80 3 PLIP interactions: 3 interactions with chain H Hydrophobic interactions: H:P.55, H:F.56 Hydrogen bonds: H:P.55 NAG-NAG-BMA.9: 6 residues within 4Å: Chain I: P.55, F.59, F.60, N.77, S.79, H.80 1 PLIP interactions: 1 interactions with chain I Hydrogen bonds: I:P.55

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 2 residues within 4Å: Chain D: N.121, N.125 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:N.121, D:N.125 NAG.5: 5 residues within 4Å: Chain E: L.15, Q.19, K.117, N.121, N.125 4 PLIP interactions: 4 interactions with chain E Hydrophobic interactions: E:K.117 Hydrogen bonds: E:K.117, E:N.121, E:N.125 NAG.6: 3 residues within 4Å: Chain F: K.117, N.121, N.125 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:N.125 NAG.10: 2 residues within 4Å: Chain J: N.121, N.125 2 PLIP interactions: 2 interactions with chain J Hydrogen bonds: J:N.121, J:N.125 NAG.11: 5 residues within 4Å: Chain K: L.15, Q.19, K.117, N.121, N.125 4 PLIP interactions: 4 interactions with chain K Hydrophobic interactions: K:K.117 Hydrogen bonds: K:K.117, K:N.121, K:N.125 NAG.12: 3 residues within 4Å: Chain L: K.117, N.121, N.125 1 PLIP interactions: 1 interactions with chain L Hydrogen bonds: L:N.125

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shim, A.H. et al., Multipronged attenuation of macrophage-colony stimulating factor signaling by Epstein-Barr virus BARF1. Proc.Natl.Acad.Sci.USA (2012)

Release Date

2012-08-29

Peptides

Secreted protein BARF1: ABCGHI
Macrophage colony-stimulating factor 1: DEFJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
D

G
A

H
B

I
D

D
E

E
F

F
G

J
E

K
F

L
G

Secreted protein BARF1

Macrophage colony-stimulating factor 1

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