SMTL ID : 4fa8.2 (3 other biounits)

Multi-pronged modulation of cytokine signaling

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-hexamer

Ligands

6 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 7 residues within 4Å: Chain A: P.55, F.56, F.59, F.60, N.77, S.79, H.80 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.56 Hydrogen bonds: A:P.55 NAG-NAG-BMA.2: 7 residues within 4Å: Chain B: P.55, F.56, F.59, F.60, N.77, S.79, H.80 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:P.55, B:F.56 Hydrogen bonds: B:P.55 NAG-NAG-BMA.3: 6 residues within 4Å: Chain C: P.55, F.59, F.60, N.77, S.79, H.80 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:P.55 NAG-NAG-BMA.4: 7 residues within 4Å: Chain D: P.55, F.56, F.59, F.60, N.77, S.79, H.80 2 PLIP interactions: 2 interactions with chain D Hydrophobic interactions: D:F.56 Hydrogen bonds: D:P.55 NAG-NAG-BMA.5: 7 residues within 4Å: Chain E: P.55, F.56, F.59, F.60, N.77, S.79, H.80 3 PLIP interactions: 3 interactions with chain E Hydrophobic interactions: E:P.55, E:F.56 Hydrogen bonds: E:P.55 NAG-NAG-BMA.6: 6 residues within 4Å: Chain F: P.55, F.59, F.60, N.77, S.79, H.80 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:P.55

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shim, A.H. et al., Multipronged attenuation of macrophage-colony stimulating factor signaling by Epstein-Barr virus BARF1. Proc.Natl.Acad.Sci.USA (2012)

Release Date

2012-08-29

Peptides

Secreted protein BARF1: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
D

D
A

E
B

F
D

Secreted protein BARF1

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