SMTL ID : 4fc0.1

Crystal Structure of Human Kinase Domain of B-raf with a DFG-out Inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.95 Å

Oligo State

homo-dimer

Ligands

2 x 0T2: 2-chloro-3-[(2-cyanopropan-2-yl)oxy]-N-{5-[{2-[(cyclopropylcarbonyl)amino][1,3]thiazolo[5,4-b]pyridin-5-yl}(methyl)amino]-2-fluorophenyl}benzamide(Non-covalent)

0T2.1: 22 residues within 4Å: Chain A: I.21, A.39, K.41, E.59, V.62, L.63, L.72, I.85, T.87, Q.88, W.89, C.90, E.91, G.92, L.125, I.130, H.132, F.141, I.150, G.151, D.152, F.153 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:A.39, A:K.41, A:E.59, A:V.62, A:L.72, A:T.87, A:W.89, A:L.125, A:I.130, A:F.141, A:D.152 Hydrogen bonds: A:K.41, A:E.59, A:E.59, A:C.90, A:C.90, A:D.152 pi-Stacking: A:F.153 0T2.2: 21 residues within 4Å: Chain B: V.29, A.39, K.41, E.59, V.62, L.63, L.72, I.85, T.87, Q.88, W.89, C.90, G.92, L.125, H.132, F.141, I.150, G.151, D.152, F.153, A.156 17 PLIP interactions: 17 interactions with chain B Hydrophobic interactions: B:A.39, B:K.41, B:E.59, B:V.62, B:L.72, B:T.87, B:W.89, B:L.125, B:F.141, B:D.152 Hydrogen bonds: B:K.41, B:E.59, B:C.90, B:C.90, B:D.152 pi-Stacking: B:W.89, B:F.153

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hirose, M. et al., Design and synthesis of novel DFG-out RAF/vascular endothelial growth factor receptor 2 (VEGFR2) inhibitors: 3. Evaluation of 5-amino-linked thiazolo[5,4-d]pyrimidine and thiazolo[5,4-b]pyridine derivatives. Bioorg.Med.Chem. (2012)

Release Date

2014-01-08

Peptides

Serine/threonine-protein kinase B-raf: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Serine/threonine-protein kinase B-raf

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