SMTL ID : 4fgy.1

Identification of a unique PPAR ligand with an unexpected binding mode and antibetic activity

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.84 Å

Oligo State

hetero-1-1-mer

Ligands

1 x 0W3: (4R,6S,8S,12R,14R,16Z,18R,19R,20S,21S)-19,21-dihydroxy-22-{(2S,2'R,5S,5'S)-5'-[(1R)-1-hydroxyethyl]-2,5'-dimethyloctahydro-2,2'-bifuran-5-yl}-4,6,8,12,14,18,20-heptamethyl-9,11-dioxodocos-16-enoic acid(Non-covalent)

0W3.1: 20 residues within 4Å: Chain A: A.72, I.75, F.76, G.78, C.79, Q.80, R.82, S.83, I.120, Y.121, M.123, L.124, L.127, V.133, I.135, L.147, F.154, F.157, M.158, H.243 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:I.75, A:F.76, A:F.76, A:R.82, A:I.120, A:L.124, A:L.127, A:V.133, A:L.147, A:F.154

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zheng, W. et al., Identification of the antibiotic ionomycin as an unexpected peroxisome proliferator-activated receptor Gamma (PPAR-gamma) ligand with a unique binding mode and effective glucose-lowering activity in a mouse model of diabetes. Diabetologia (2013)

Release Date

2013-03-20

Peptides

Peroxisome proliferator-activated receptor gamma: A
Nuclear receptor coactivator 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Peroxisome proliferator-activated receptor gamma

Nuclear receptor coactivator 1

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