SMTL ID : 4fjv.1 (2 other biounits)

Crystal Structure of Human Otubain2 and Ubiquitin Complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

hetero-1-1-mer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: F.9, N.10, L.11, S.13, K.47, T.48, K.49 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.47 GOL.2: 2 residues within 4Å: Chain A: K.15, D.17 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.15, A:D.17 GOL.3: 7 residues within 4Å: Chain A: Y.198, V.199, D.200, Y.223, K.224, T.225, S.226 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.223, A:T.225, A:S.226, A:S.226

1 x NEH: ETHANAMINE(Covalent)

NEH.4: 6 residues within 4Å: Chain A: G.52, C.54, E.177, S.226, H.227 Chain B: G.85 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.226

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Altun, M. et al., The human otubain2-ubiquitin structure provides insights into the cleavage specificity of poly-ubiquitin-linkages. Plos One (2015)

Release Date

2013-06-12

Peptides

Ubiquitin thioesterase OTUB2: A
Polyubiquitin-C: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Ubiquitin thioesterase OTUB2

Polyubiquitin-C

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