SMTL ID : 4fjv.2 (2 other biounits)

Crystal Structure of Human Otubain2 and Ubiquitin Complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

hetero-1-1-mer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: F.9, N.10, S.13, K.47, T.48 Ligands: GOL.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:F.9 Water bridges: A:G.50 GOL.2: 1 residues within 4Å: Chain A: R.23 No protein-ligand interaction detected (PLIP) GOL.3: 5 residues within 4Å: Chain A: S.13, E.14, C.16, K.47 Ligands: GOL.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.13, A:S.13 Water bridges: A:K.47

1 x NEH: ETHANAMINE(Covalent)

NEH.4: 6 residues within 4Å: Chain A: G.52, C.54, E.177, S.226, H.227 Chain B: G.85 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.177, A:S.226

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Altun, M. et al., The human otubain2-ubiquitin structure provides insights into the cleavage specificity of poly-ubiquitin-linkages. Plos One (2015)

Release Date

2013-06-12

Peptides

Ubiquitin thioesterase OTUB2: A
Polyubiquitin-C: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Ubiquitin thioesterase OTUB2

Polyubiquitin-C

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