SMTL ID : 4fn0.1 (1 other biounit)

Crystal structure of mouse nectin-2 extracellular fragment D1-D2, 2nd crystal form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.35 Å

Oligo State

homo-dimer

Ligands

4 x NAG- NAG- BMA- FUC: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-FUC.1: 4 residues within 4Å: Chain A: E.95, G.96, N.97, W.115 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-FUC.2: 7 residues within 4Å: Chain A: R.4, T.30, E.31, N.107, R.110 Chain B: P.58, N.59 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-FUC.3: 4 residues within 4Å: Chain B: E.95, G.96, N.97, W.115 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-FUC.4: 7 residues within 4Å: Chain A: P.58, N.59 Chain B: R.4, T.30, E.31, N.107, R.110 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:T.30

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Harrison, O.J. et al., Nectin ectodomain structures reveal a canonical adhesive interface. Nat.Struct.Mol.Biol. (2012)

Release Date

2012-08-22

Peptides

Poliovirus receptor-related protein 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Poliovirus receptor-related protein 2

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