SMTL ID : 4fn0.2 (1 other biounit)

Crystal structure of mouse nectin-2 extracellular fragment D1-D2, 2nd crystal form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.35 Å

Oligo State

homo-dimer

Ligands

3 x NAG- NAG- BMA- FUC: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-FUC.1: 2 residues within 4Å: Chain A: N.97, W.115 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-FUC.2: 6 residues within 4Å: Chain A: R.4, T.30, E.31, N.107, R.110 Chain B: P.58 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-FUC.3: 2 residues within 4Å: Chain B: N.97, W.115 No protein-ligand interaction detected (PLIP)

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 4 residues within 4Å: Chain B: T.30, E.31, N.107, R.110 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:E.31 Hydrogen bonds: B:T.30, B:R.110

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Harrison, O.J. et al., Nectin ectodomain structures reveal a canonical adhesive interface. Nat.Struct.Mol.Biol. (2012)

Release Date

2012-08-22

Peptides

Poliovirus receptor-related protein 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

Poliovirus receptor-related protein 2

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